Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1296 ATGGGTGCTTATAAGTATGTTTCGGAGCTCTGGCGCAAGAAGCAATCGGATGTAATGAGATTCTTGCAGAGGGTAAGGTGCTGGGAGTATCGTCAGCAGCCTTCCATTGTCCGTGTCACTAGGCCAACCCGCCCCGACAAGGCTCGTCGCTTGGGTTACAAGGCCAAACAGGGATATGTGGTTTACCGTGTTCGTGTGCGAAGGGGTGGCCGCAAGAGACCTGTTCCAAAGGGTATTGTTTATGGCAAGCCCACGAACCAGGGTGTTACTCAACTGAAATTTCAGCGAAGCAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGGAAGCTAGGTGGCCTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCGACATACAAATACTTCGAGATCATTATGGTGGATGTTGCGCACGCAGCTATTAGAAATGATCCAAGGATCAATTGGCTCTGCAATCCGGTCCATAAACACAGGGAACTTTGCGGCCTCACCTCTGCTGGGAAGTCTAACAGGGGTTTACGTGGCAAGGGACATCTTTACCACAAAAATCGTCCTTCCCGCAGGGCAACCTGGAAGAGAAACAATACCCTTTCCCTCCGCCGTTACCGTTGA 615 0.5138 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIMVDVAHAAIRNDPRINWLCNPVHKHRELCGLTSAGKSNRGLRGKGHLYHKNRPSRRATWKRNNTLSLRRYR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1296 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Ahy1g1296 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Ahy1g1296 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Ahy1g1296 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Ahy1g1296 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Ahy1g1296 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
Ahy1g1296 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1296 Ahy-Chr1 38158636 38160698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1296 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.176 1.55e-126 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1296 K02877 - gmx:100306052 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1314 11 45952540 45954612 Ahy1g1296 1 38158636 38160698 hybridization
Ahy5g1609 5 42200900 42203305 Ahy1g1296 1 38158636 38160698 PCT
Ahy1g1296 1 38158636 38160698 Ahy5g1609 5 42200900 42203305 PCT