Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1288 ATGGACATGGAAGAAACTGTCCCTTTAGAGAGCGAAACACAACCAACTACGTCCTTCTCTTTCCCCATTATACCCTCCACGTCCTCCTCTTCCTCCTCCTCCAAGAAGAAGAAGAAGGTAGTTTTGAAGAGGAGCAATGATGGGAGGCACCCAACTTATAGAGGAGTACGAATGCGCCAATGGGGAAAGTGGGTATCCGAAATTCGGGAGCCTAGGAAGAAATCTAGGATTTGGCTTGGAACTTTTCCCACGGCCGAGATGGCGGCTCGAGCTCATGATGTGGCGGCTCTAACAATCAAGGGCAGCTCAACTTACCTCAATTTTCCTGAGCTAATAGCCGAATTGCCTCGTCCGGCTAGCAATTGCCCTAAAGACATTCAAGCAGCCGCAGCCAAAGCGGCCGTCATGAATTATCACCATGAAAGCCATGACATAGAATTAGAAGCCGAGTCCGAACTAAGCCAAGTCGAGTCTTCTTCAAGTCAAACTCAAATATCATCAAGTTCTACTTCATCATTATCGAAGGGTGAGGATGACATGTTCATGAATCTCCCTGATCTATCATCAGACTTGAATCATAGTTCTGATGAGTTTCATTACCTCTCGGCTTGGGTCATAGCTGGAGCCGAAGCCGAACATCTAGACTCAGATTTCCGGCTTGAAGAACCGTTCTTATGGTAG 681 0.4714 MDMEETVPLESETQPTTSFSFPIIPSTSSSSSSSKKKKKVVLKRSNDGRHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALTIKGSSTYLNFPELIAELPRPASNCPKDIQAAAAKAAVMNYHHESHDIELEAESELSQVESSSSQTQISSSSTSSLSKGEDDMFMNLPDLSSDLNHSSDEFHYLSAWVIAGAEAEHLDSDFRLEEPFLW* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1288 226 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Ahy1g1288 226 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Ahy1g1288 226 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Ahy1g1288 226 MobiDBLite consensus disorder prediction 1 53 - -
Ahy1g1288 226 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Ahy1g1288 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 226 - -
Ahy1g1288 226 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Ahy1g1288 226 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Ahy1g1288 226 MobiDBLite consensus disorder prediction 9 35 - -
Ahy1g1288 226 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Ahy1g1288 226 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Ahy1g1288 226 MobiDBLite consensus disorder prediction 154 177 - -
Ahy1g1288 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 27 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1288 Ahy-Chr1 37814767 37816220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1288 43 225 AP2-EREBP Transcription Factor Family AT2G44940 49.524 2.07e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy1g1288 AP2 1.20E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1288 - - aip:107629817 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1306 11 45348980 45350429 Ahy1g1288 1 37814767 37816220 hybridization