Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1249 ATGGAGCTTAGTTTTATGCACAAACTTGGGGTTGTTTGTCTCATATTATTGGTCTTAAATAGTGCAGTGTGCTGTTTTGCGGATTCATATAGGAAATCAAGAGCATCTTATTACAATACCCCTGATGGCTACGGGAATCCATGGGGAGCTTGTGGCTATGGCGAGTACGGAAGGACTGTCAACGGTGGCAATGTTGCGGCCGTGTCCGGTGATATTTGGAAAGGTGGAAATGGTTGCGGCGCATGCTATCAGATTCGGTGTAAAATAGCACAATATTGTGACGAAGATGGAACACGTGTAGTAGTAACAGATTACGGTGAAGGAGACAGAACAGAGTTCATAATGAGCGAACATGCATTCTCAAATTTGGCACGTGACTCAGCTGCTTCTGCAAAGTTGATGAAATATGGTGTTGTGGACATTGAATACAAGAGGGTCTCTTGTAAATACTCTAACCGCAATGTTCTTGTTAAGATCCATGAAAAGAGCAATAATCCTTATTACTTTGCTATGTTGCTTCTCAATGTTGGTGGAAAATGTGACGTTGCTGCTGTTCAGTTGTGGCAGGAAGATCACAAAGAATGGAGTCCACTGCGAAGGGTGTATGGAACAGTTTTTGATTATGAGAACCCACCAAGTGGTAAAATCACCTTAAGGTTCCAAATGGATTGTGGTGAAAGGCTTGTTTGGGTGCATCCCAAGAAACCTATCCCCAGTGATTGGAATGCTGGGGAAGCATATGACACCGGCCTTCAAATCAATTAG 765 0.4314 MELSFMHKLGVVCLILLVLNSAVCCFADSYRKSRASYYNTPDGYGNPWGACGYGEYGRTVNGGNVAAVSGDIWKGGNGCGACYQIRCKIAQYCDEDGTRVVVTDYGEGDRTEFIMSEHAFSNLARDSAASAKLMKYGVVDIEYKRVSCKYSNRNVLVKIHEKSNNPYYFAMLLLNVGGKCDVAAVQLWQEDHKEWSPLRRVYGTVFDYENPPSGKITLRFQMDCGERLVWVHPKKPIPSDWNAGEAYDTGLQIN* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1249 254 Pfam Expansin C-terminal domain 157 229 IPR007117 -
Ahy1g1249 254 PANTHER EXPANSIN-B3 5 254 - -
Ahy1g1249 254 SMART dpbb_1 65 143 IPR007112 -
Ahy1g1249 254 Pfam Lytic transglycolase 66 142 IPR009009 -
Ahy1g1249 254 Gene3D - 150 254 IPR036749 -
Ahy1g1249 254 Gene3D - 26 146 IPR036908 -
Ahy1g1249 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 153 IPR007112 -
Ahy1g1249 254 SUPERFAMILY PHL pollen allergen 153 248 IPR036749 -
Ahy1g1249 254 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Ahy1g1249 254 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Ahy1g1249 254 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Ahy1g1249 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Ahy1g1249 254 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Ahy1g1249 254 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Ahy1g1249 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 249 IPR007117 -
Ahy1g1249 254 PANTHER EXPANSIN-B1-LIKE PROTEIN 5 254 - -
Ahy1g1249 254 SUPERFAMILY Barwin-like endoglucanases 16 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1249 Ahy-Chr1 35136574 35138520 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1249 1 254 Expansin Gene Family AT4G17030 46.850 1.95e-84 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1249 - - gmx:100779487 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1275 11 42891093 42893062 Ahy1g1249 1 35136574 35138520 hybridization