Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1184 ATGGCTGTCTCACTTTTGGGTCCTCTGGTTATTACCACCTTGCTTTGCATGCAAACTCTGGCAGATACTTCATGCACTGATTGTTTTGTTCAATCTCGAGCAGAATATTACCCGAACTCTGAAGTAAATGGCACAGATGCTGGTGCATGCGGATTCGGTTCCTTTGGTGCTACCATTAATGGTGGCGATGTATCAGCTGCATCCAATCTTTACCGTAATGGTGTTGGCTGTGGCTCCTGTTACCAGGTAAGGTGTACAAACAATACCTATTGCTTAGACAATGGTGTCACTGTAGTTATAACTGACCAAGGCTCAGGTGATGGCACCGACTTCATTCTGAGTCAACGAGCCTTTGGTGGGATGGCTCAGACCAGTGACAAAGCTCCTTATCTATTAGCTCTTGGCATAGTTGATATTGAATACAGGCGTGTTTCATGCAGCTACCCAAACAAAAACATAACAATTAAGATAGACGAGAGCAGCAGTAATCCTAATTACTTGGCTTTTGTCATATGGTTCCAACAAGGAATGAGAGACATAACTGCTGTGCAGCTCTGTGAGACGCAGAACTTTGTCTGTAAGTTACTGGATCGGACTCATGGAGCAGTCTGGACTACTACCTCTCCACCAAGTGGACCTCTGTCGTTACGGATGCTGTTTAGTGCTGAAGATGGAGACCAAACATGGGTTGTCCCCAGTAGTAACATACCAGAAGACTGGAAAGCAGGGGAGACATATGACTCAGGAGTACAAGTGGACAAATAG 765 0.4523 MAVSLLGPLVITTLLCMQTLADTSCTDCFVQSRAEYYPNSEVNGTDAGACGFGSFGATINGGDVSAASNLYRNGVGCGSCYQVRCTNNTYCLDNGVTVVITDQGSGDGTDFILSQRAFGGMAQTSDKAPYLLALGIVDIEYRRVSCSYPNKNITIKIDESSSNPNYLAFVIWFQQGMRDITAVQLCETQNFVCKLLDRTHGAVWTTTSPPSGPLSLRMLFSAEDGDQTWVVPSSNIPEDWKAGETYDSGVQVDK* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1184 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Ahy1g1184 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Ahy1g1184 254 Gene3D - 16 147 IPR036908 -
Ahy1g1184 254 PANTHER EXPANSIN-B3 9 253 - -
Ahy1g1184 254 Pfam Expansin C-terminal domain 153 231 IPR007117 -
Ahy1g1184 254 Pfam Lytic transglycolase 67 141 IPR009009 -
Ahy1g1184 254 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 9 253 - -
Ahy1g1184 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Ahy1g1184 254 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Ahy1g1184 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Ahy1g1184 254 SUPERFAMILY Barwin-like endoglucanases 17 150 IPR036908 -
Ahy1g1184 254 Gene3D - 148 252 IPR036749 -
Ahy1g1184 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1184 Ahy-Chr1 31062903 31065070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1184 9 250 Expansin Gene Family AT4G17030 42.387 1.02e-61 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1184 - - gmx:100794009 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1191 11 36956763 36958782 Ahy1g1184 1 31062903 31065070 hybridization
Ahy5g0463 5 5566823 5569348 Ahy1g1184 1 31062903 31065070 PCT
Ahy1g1184 1 31062903 31065070 Ahy5g0463 5 5566823 5569348 PCT