Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1177 ATGGTTTGCACTGTCAATGATTTACAACAATGGAAGGATTTCCCAAAGGGACTCAAGGTTCTTCTCCTTGAAGGAGACGCCACTTCCGCGGCCGAGATAAAACCAAAGCTTGAAGCCATGGACTATAATGTTTCTGCTTTCTGCGACGAGAATGAAGCCTTATCAGCGATCTCAAGTAGATCCGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTATAAACAGCGGCCAAGGAGGTTTCAAATTTCTTGAGAATGCCAAGGATTTGCCAACCATTATGACTTCAAACGATCATTGCCTGAGCACCATGATGAAATGCATAGCGCTCGGTGCAGTTGAGTTCCTTCACAAACCTCTCTCCGAGGACAAGCTTCGAAATATATGGCAGCATGTGGTTCACAAGGCATTCAATGCTAGTGCAAGTGTTATGTCCGAATCGCTAAAACCGGTCAAAGAATCTGTAGTATCCATGTTGCAGCTCCAAACAGACAATGAACAACAAGAAAGTACATATACTGATGATGATCCTGATCCTGGAAGCGATAAGTATCCGGCTCCATCGACCCCCCAATTGAATCAGGGATTGAGATTGATGGACGATGGCGATTGTCCAGAGCAGACTAATTGCTCAATAGAAAAGGAGAGTGGGGAACATGATGGAGAAGGAGAATCGAAATCCGTCGAAACTACATGTGAAAATTTGAATTCTGAAAGTAATAATCCTAATGAACCAATGAACACTGAAAAGACTTTGGTCAAGAATTTAGCGGAAGGTTCTAGAGATGGGAACCATGATAGTTCTGTTTATAAGCATACAAATGATAAGGTTCTTAGCAGCGATGATGGTAATACAAAATCTTCAAATAAAGTGGATTCATGCACGTTGAAAGCTCATCGGAAGAAGATGAAAATAGACTGGACACCCGAGCTGCACAAAAAATTTGTGAAAGCGGTGGAACAACTAGGCCTTGACCAAGCTATTCCATCTCGAATAATGGATCTAATGAAAGTGGAGGGACTGACAAGGCATAATGTTGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACAAATATTGCCCAAGGAAGAAGGTAGGAAATGGCTAAATCAAAGGGATCAAATGCAAAGGAGCTATTGTCTTCAACAACGACCAATAATGGCGTTTCCACCACCGAATCATTCCAATCACACCCTTTCGCCAGCTCCTGTGTATCCAGTGTGGAGGCAATCCGGCGGCCAAGCAGCAGCTATGCCGGTTTGGGGCCCTCCTGGTTATCCTCTCTGGCATCCTACAGAAAGTTGGCACTGGAAGCCGCTTCCCGGGATGCATGCGGATGCATGGGGATGCCCGGTTCTGCCACCTCCTCAGGCTCCTCTTCCTTGCTTTTCCTACCCTTTGAATGTTCGCGGCATGCACCATACTAGTGCTGTGGATTACAAGTCTATCATGCCACAGAGTTCCCTTGATCTTCATCTGGCCGAGGAGGTTGTTGACAAGGTAGTGAAAGAAGCAATAAGCAAGCCATGGCTACCATTACCCTTAGGCCTGAAGCCTCCTTCCACAGATAGTGTGCTGGCCGAGCTTTCGCGAAAAGGCATATCGACCATCCCTCCATGTAGCAAGGGGTCCTAA 1635 0.4557 MVCTVNDLQQWKDFPKGLKVLLLEGDATSAAEIKPKLEAMDYNVSAFCDENEALSAISSRSESFHIAIVEVSINSGQGGFKFLENAKDLPTIMTSNDHCLSTMMKCIALGAVEFLHKPLSEDKLRNIWQHVVHKAFNASASVMSESLKPVKESVVSMLQLQTDNEQQESTYTDDDPDPGSDKYPAPSTPQLNQGLRLMDDGDCPEQTNCSIEKESGEHDGEGESKSVETTCENLNSESNNPNEPMNTEKTLVKNLAEGSRDGNHDSSVYKHTNDKVLSSDDGNTKSSNKVDSCTLKAHRKKMKIDWTPELHKKFVKAVEQLGLDQAIPSRIMDLMKVEGLTRHNVASHLQKYRMHKRQILPKEEGRKWLNQRDQMQRSYCLQQRPIMAFPPPNHSNHTLSPAPVYPVWRQSGGQAAAMPVWGPPGYPLWHPTESWHWKPLPGMHADAWGCPVLPPPQAPLPCFSYPLNVRGMHHTSAVDYKSIMPQSSLDLHLAEEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRKGISTIPPCSKGS* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1177 544 MobiDBLite consensus disorder prediction 254 278 - -
Ahy1g1177 544 MobiDBLite consensus disorder prediction 211 226 - -
Ahy1g1177 544 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 542 IPR044825 GO:0003700|GO:0045893
Ahy1g1177 544 SUPERFAMILY CheY-like 16 135 IPR011006 -
Ahy1g1177 544 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Ahy1g1177 544 SUPERFAMILY Homeodomain-like 299 358 IPR009057 -
Ahy1g1177 544 Gene3D - 297 359 - -
Ahy1g1177 544 MobiDBLite consensus disorder prediction 161 289 - -
Ahy1g1177 544 Gene3D - 18 145 - -
Ahy1g1177 544 Pfam Myb-like DNA-binding domain 306 353 IPR001005 -
Ahy1g1177 544 MobiDBLite consensus disorder prediction 227 253 - -
Ahy1g1177 544 SMART REC_2 18 128 IPR001789 GO:0000160
Ahy1g1177 544 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Ahy1g1177 544 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 542 - -
Ahy1g1177 544 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 301 356 IPR006447 GO:0003677
Ahy1g1177 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 298 357 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1177 Ahy-Chr1 30469071 30475445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1177 1 541 Response Regulator Gene Family AT4G18020 49.129 9.32e-145 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ahy1g1177 Response_reg 5.60E-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1177 - - ccaj:109791214 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1184 11 36333879 36340250 Ahy1g1177 1 30469071 30475445 hybridization
Ahy5g0469 5 5613157 5619296 Ahy1g1177 1 30469071 30475445 PCT
Ahy1g1177 1 30469071 30475445 Ahy5g0469 5 5613157 5619296 PCT