Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1144 ATGTCGATGGCTGGTTTGGATTTAGGAACAGCATCACGCTTCGTTCAAAATCTTCACAGACCAGACTTACACCTTCAGCAACAACACCATTACCAAGATTCCCAAGAACAACAACAACACCACACACCAGATCGTGCACCTGCACCTCAGTTCTCCGGCGAAGAAGATGATACCAGCCAAGGCGGCGGAAGCGGAAGCGGCGGTGGAGGCGGTTTTGAGCTCGGCTCCGGCTCTGGAGGCCGGCGCCCCCGAGGCCGTCCGCCGGGCTCGAAGAACAAGCCGAAACCGCCAGTCATCATCACAAGAGAGAGTGCCAACACGCTAAGAGCTCACATCCTCGAAGTTGCGAGCGGCTCCGACGTCTTCGACAGCGTCGCTACCTACGCGCGGCGGCGCCAGCGCGGGATCTGCATCTTGAGCGGCAGCGGAACCGTGACCAATGTTACTATCCGGCAGCCAGCTGCGGCAGGCTCCGTTGTCACGCTCCAGGGAAGGTTCGAGATCCTGTCGCTCTCCGGCTCCTTCCTCCCGCCGCCTGCACCGCCCGGTGCCACCAGCCTCAGCATATACCTCGCTGGCGGCCAGGGACAGGTAGTCGGTGGAAACGTCGTCGGAGAGCTGATCGCGGCGGGGCCAGTGATCGTCATCGCCTCGTCGTTCACGAACGTGGCGTACGAGCGGCTGCCGTTGGACGAGGAGGAGCAGCTCCAGATTCAGGCTCCCGGAAGTGCGGCGGCTGGAAGTCAGGGCTCCGCGGGCGTCGGAAACAACGCTTTTCCAGATCCTTCTTCGGGTTTGCCGTTCTTCAATTTGCCGCTTGGTATGCAGAATAATAATGTTCAATTGCCTGTTGACGGTTACTCTTCAGGTCCACGCCCTCCGTATTAA 888 0.598 MSMAGLDLGTASRFVQNLHRPDLHLQQQHHYQDSQEQQQHHTPDRAPAPQFSGEEDDTSQGGGSGSGGGGGFELGSGSGGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGSDVFDSVATYARRRQRGICILSGSGTVTNVTIRQPAAAGSVVTLQGRFEILSLSGSFLPPPAPPGATSLSIYLAGGQGQVVGGNVVGELIAAGPVIVIASSFTNVAYERLPLDEEEQLQIQAPGSAAAGSQGSAGVGNNAFPDPSSGLPFFNLPLGMQNNNVQLPVDGYSSGPRPPY* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1144 295 MobiDBLite consensus disorder prediction 27 98 - -
Ahy1g1144 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 237 - -
Ahy1g1144 295 CDD DUF296 109 192 IPR005175 -
Ahy1g1144 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 289 IPR014476 GO:0003680
Ahy1g1144 295 ProSiteProfiles PPC domain profile profile. 105 242 IPR005175 -
Ahy1g1144 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 222 IPR005175 -
Ahy1g1144 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 3 289 - -
Ahy1g1144 295 Gene3D - 108 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1144 Ahy-Chr1 27489396 27491104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1144 3 295 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 66.557 2.26e-91 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1144 - - pvu:PHAVU_003G230600g 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1041 11 25134765 25136472 Ahy1g1144 1 27489396 27491104 hybridization
Ahy5g0489 5 5863207 5864925 Ahy1g1144 1 27489396 27491104 PCT
Ahy1g1144 1 27489396 27491104 Ahy5g0489 5 5863207 5864925 PCT