Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1140 ATGGCTGGTTTGGATTTACAAACAGCATCACTCTTCGTTCAAAACCTTCACAGACCAGAATTACACCTTCAACAACAACACCATTATCACCGCTCCCAACAACAACAACATGAACAAACAGAAAATTGTGCAGCTGTACCACAATTCTCAAGTGAAGATGATGATAGCAGCCAAGGCGACGGAACGGGACGCGGAAGCAGTGGCTTTGAGCTCGTCTCCGCCGGCGGAGTCCGCCGTTCCAGGGGCCGTCCGCGAGGCTCGAAGAACAAGCCAAAACCGCCAGTGGTAATCACAAGAGAGAGCTCCAACACGCATAACGCTCATATCCTTGAAGTCGCGAGTGGCTCCGACGTCTTCGACAGCGTTGCCACCTACGCGGGGCTCCGCCAGCGCGGTATCTGCATCTTGAGCGGCAATGGAACCGTCACCAACGTCACCATCCAGGACCCCGCAGCGCCCGGCTCTGTTGTCACGCTCCATGGAAGGTTCGAGATACTGTCTCTCTCTGGATCGTTCCTGCCGCCGCCTGCTCCGCCCGGCGCGACGAGCCTCAGTATATACCTCGCCAGCGGGAAGGGACAGGTCATCGGAGGAAAAGTAGCCGGAAAGCTGATTGCGGCGGGGCCGGTGATGGTCATCGCCTCGTCCTTCACCAACGTGGCGTACGAGCGGCTGCCGTTGGACCAGGACGACGAACAGGAGCTCCAAATTCAGGCTCCGCCTCTGCCGGCGGTTGCTCAGGGCTCCGCAGGCGGTTGCGGCGTGGGAAACGGCGCTTTTCTGGATCCTTCTTCTGGTTTGCCGTTCTTCAATTTTCCGCTTGGTATGCATCAGAATGTTCAGTTGCCTGTGGACGGTTACTTTTCAGGTCAACGCGCTATCCTTTAA 888 0.5687 MAGLDLQTASLFVQNLHRPELHLQQQHHYHRSQQQQHEQTENCAAVPQFSSEDDDSSQGDGTGRGSSGFELVSAGGVRRSRGRPRGSKNKPKPPVVITRESSNTHNAHILEVASGSDVFDSVATYAGLRQRGICILSGNGTVTNVTIQDPAAPGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSIYLASGKGQVIGGKVAGKLIAAGPVMVIASSFTNVAYERLPLDQDDEQELQIQAPPLPAVAQGSAGGCGVGNGAFLDPSSGLPFFNFPLGMHQNVQLPVDGYFSGQRAIL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1140 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 290 IPR014476 GO:0003680
Ahy1g1140 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 237 - -
Ahy1g1140 295 CDD DUF296 106 217 IPR005175 -
Ahy1g1140 295 Gene3D - 106 240 - -
Ahy1g1140 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 290 - -
Ahy1g1140 295 MobiDBLite consensus disorder prediction 36 64 - -
Ahy1g1140 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 219 IPR005175 -
Ahy1g1140 295 MobiDBLite consensus disorder prediction 24 102 - -
Ahy1g1140 295 ProSiteProfiles PPC domain profile profile. 100 238 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1140 Ahy-Chr1 26847323 26848901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1140 1 287 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 51.935 1.17e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1140 - - jre:108994023 304.293