Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1135 ATGATGCAAATCTCCTCCACCAACAAGTACTTGCCTGAATTTGGAATGGATGAGTCGGTTTTCTTCCATAACCAATACCCAATGATGGATTCATCAACAATCACATCATCTCCATCACCATGGCCGCAGATTCTTGATGATATTGACTTCAACCAAATCCAAGAGTCCTTCTCTTCAGCTTCATCCCCAAAGAGCTACACCTCAAACAAGCGCTTCAACTCTTCTTCCGCTGCCGGAACCACCATGCCACAAAGCTCTTTCTCACCAATTGAAAGACCAACTAAGCAACAAAAAAATGCTTATAGCCATGGGATTAGTACTAATACCACTACTACTACCAGCAATGAATTCATGGTTCCCAAAGCTTCTTCCTCTTCTTCTTCCCAAATCATCTCGTTCGAGCAGCACTCGAACGCTTCTTCTTCGGTTGCTTCCTATAACCACCATCATCAGCAACTCTACAATAATAACCCTTCTTCAGATCAGGGTAACCATGTTTTGAGGCCCAAGACTGAGAGTGTGTGCAGTGAGAATTTGGATTTTGCCACTGTGGTTTCTCATGCTGATTACCTGAGTGGTTATGATAAGGCCAATAAAGGTTCCGCGGCGGCGGCCACCACCAGAAACCCAACTCAGGCCCAAGATCACGTCATTGCCGAAAGAAAACGAAGGGAGAAGCTCAGCCAGAGGTTCATTGCACTTTCCGCCATTGTTCCTGGACTCAAGAAGATGGACAAGGCTTCTGTATTGGGAGATGCTATCAAATATCTGAAGCAACTGCAAGAAAAAGTGAAGATTCTAGAAGAGCAAGTTGCTGAAAAAACCGTCGAATCCGCAATTTTTGTGAAGAGATCCATCCTCTTCGCAGAAGACAATGGATCTTCTTCGGAGGAGAACCCGGATCAGAAAATCCCGGAGATAGAAGCAAGAATTTCAGGCAAAGACGTTCTCATTAGAATCCACTGTGACAAACACAGTGGAATAGTGCCAAAAATAATCAACGAGATTGAGAAGCATGATCTCAGTGTTCAAAGTAGTAGCTTCTTGCCCTTTGGCAACAACTCACTTGACATCACCATTGTTGCTCAGATGAAGAAGGAATGTACATTGACAGCAAAAGATATAATAAAAGGCTTAAATCAGACTTTGAAGCAGCTGAGTTGA 1164 0.4356 MMQISSTNKYLPEFGMDESVFFHNQYPMMDSSTITSSPSPWPQILDDIDFNQIQESFSSASSPKSYTSNKRFNSSSAAGTTMPQSSFSPIERPTKQQKNAYSHGISTNTTTTTSNEFMVPKASSSSSSQIISFEQHSNASSSVASYNHHHQQLYNNNPSSDQGNHVLRPKTESVCSENLDFATVVSHADYLSGYDKANKGSAAAATTRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQVAEKTVESAIFVKRSILFAEDNGSSSEENPDQKIPEIEARISGKDVLIRIHCDKHSGIVPKIINEIEKHDLSVQSSSFLPFGNNSLDITIVAQMKKECTLTAKDIIKGLNQTLKQLS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1135 387 PANTHER TRANSCRIPTION FACTOR NAI1 7 386 - -
Ahy1g1135 387 Pfam Helix-loop-helix DNA-binding domain 214 261 IPR011598 GO:0046983
Ahy1g1135 387 MobiDBLite consensus disorder prediction 59 121 - -
Ahy1g1135 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 278 IPR036638 GO:0046983
Ahy1g1135 387 SMART finulus 217 266 IPR011598 GO:0046983
Ahy1g1135 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 260 IPR011598 GO:0046983
Ahy1g1135 387 PANTHER BHLH TRANSCRIPTION FACTOR 7 386 - -
Ahy1g1135 387 Coils Coil 250 277 - -
Ahy1g1135 387 Gene3D - 203 275 IPR036638 GO:0046983
Ahy1g1135 387 CDD bHLH_AtNAI1_like 213 285 - -
Ahy1g1135 387 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1135 Ahy-Chr1 25512544 25515308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1135 136 383 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.706 8.97e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy1g1135 HLH 3.40E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1135 - - adu:107482661 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1049 11 26752990 26755826 Ahy1g1135 1 25512544 25515308 hybridization
Ahy5g0497 5 6050804 6052495 Ahy1g1135 1 25512544 25515308 PCT
Ahy1g1135 1 25512544 25515308 Ahy5g0497 5 6050804 6052495 PCT