LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy1g1103	ATGAAGAGTATAGTGGAAAATGATGATGGCGGTGTTGAGCTTAATAATGAAAACAACTGGTTGGGGTTTTCACTCTCTCCACACCATCATGTTGATTCTTCTTCTTCCTCTTCTGCTGCTTCTGTTCCTCCAACAAGCTTCTACATGAACCACCATGCTTCTCATCTTAGCAGCTATGGATTCTACTACGGAATTGAACCTGACAACAATAATAGTAACGTTAGCCTGTATTCTGGTTTTCCAGTTATGCCCCATAAATCTGATGGCACCCTCTACGGAATGGAGCCTCTCATCAACAGGTCACACCCACAACAAGTGATTGGTTCAAGTTCAACGCCAAAACTGGAGAATTTGTTAGGTGGCGGCGATTTGATGGAGACACCTCATCATCACTATGAATGTAGTGTAGGTGTAGCGGAAGCAATGCCTCTCAGCCTGGACACCATTTTTCACAGAAACAACAACCACCAACCACACTTGTCATACTACCAGGGGCTTCTAGAAGGTTCCAACAAGCAAAGTACGCAAGCTTCAGACAATCTCAAGAACTGGGGGGTGATTGAGGTGAATAATAATGGAGGTGGTGAATTATTAGGAGCTTCTTCAATTGGAACAATGAGTTATGGGGGGGAGTTGCAGTCTTTGAGCTTGTCAATGAGTCCGAGCTCGCAATCGAGCTGCGTCACGAGTTCGCAGCAGCGTGTGAGTGTTGTTGGCAGCATGGATGCAACAAAGAAGAGGGGTTCTGAAAAGGTTCAACACAAGCATATTGTTCATAGAAAATCCATTGACACGTTTGGCCAAAGAACCTCACAGTATAGAGGTGTAACAAGGCATAGATGGACTGGTAGATATGAAGCACATCTATGGGACAATAGCTGCAAGAAAGAAGGCCAAAGTAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATATGGCGGCACTCAAGTACTGGGGACCCTCCACGCACATTAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGGGGAGCTTCAATGTACAGAGGAGTAACTAGGCATCACCAACATGGAAGGTGGCAAGCTCGAATTGGAAGGGTAGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACACAAGAGGAAGCAGCAGAAGCTTATGACATTGCAGCCATAAAATTCAGAGGGGTTAATGCCGTAACAAACTTTGACATAACAAGATATGATGTCGAAAAAATCATGGCAAGCAACAACCTTCTAAGCAGTGAGCTAGCACGGCGGAACAAAGAGGTTCTCGTTGGCAGAGCCGGCGAGTTTAGTAACAACCTTGATAACCAAAGCCAAGAATCGATTCTAATGCAAATCAGCCAGAGCCAGCCAAGACTGGAGGCAATAGACAATGTGTTTTTTCAAGAAGTGGAGGATCCGAGCAAGATTTATGCGCATTTGCATAATGCGCATGCATCGGATCCTTCTTCGCTGGCAACGAGCTTGAACAGCTCAAGAGAAGGTAGCCCTGAAAACAGGACAAGCTTGCCAATGCTCTCTGCCGGAGGAGTAGCTTCTACCAAGCTATTGGCAGCCGCGGCAACTATTCCGGTGCTTTCTTTGCCTCAGATGCCCGTTTTTGCCGCTTGGACAGATGCTTAG	1734	0.451	MKSIVENDDGGVELNNENNWLGFSLSPHHHVDSSSSSSAASVPPTSFYMNHHASHLSSYGFYYGIEPDNNNSNVSLYSGFPVMPHKSDGTLYGMEPLINRSHPQQVIGSSSTPKLENLLGGGDLMETPHHHYECSVGVAEAMPLSLDTIFHRNNNHQPHLSYYQGLLEGSNKQSTQASDNLKNWGVIEVNNNGGGELLGASSIGTMSYGGELQSLSLSMSPSSQSSCVTSSQQRVSVVGSMDATKKRGSEKVQHKHIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSELARRNKEVLVGRAGEFSNNLDNQSQESILMQISQSQPRLEAIDNVFFQEVEDPSKIYAHLHNAHASDPSSLATSLNSSREGSPENRTSLPMLSAGGVASTKLLAAAATIPVLSLPQMPVFAAWTDA*	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy1g1103	577	MobiDBLite	consensus disorder prediction	517	542	-	-
	Ahy1g1103	577	Pfam	AP2 domain	375	424	IPR001471	GO:0003700\|GO:0006355
	Ahy1g1103	577	Pfam	AP2 domain	272	330	IPR001471	GO:0003700\|GO:0006355
	Ahy1g1103	577	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	16	173	-	-
	Ahy1g1103	577	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	16	173	-	-
	Ahy1g1103	577	CDD	AP2	373	434	IPR001471	GO:0003700\|GO:0006355
	Ahy1g1103	577	Gene3D	AP2/ERF domain	271	340	IPR036955	GO:0003700\|GO:0006355
	Ahy1g1103	577	Gene3D	AP2/ERF domain	374	434	IPR036955	GO:0003700\|GO:0006355
	Ahy1g1103	577	CDD	AP2	271	338	IPR001471	GO:0003700\|GO:0006355
	Ahy1g1103	577	PRINTS	Ethylene responsive element binding protein signature	414	434	IPR001471	GO:0003700\|GO:0006355
	Ahy1g1103	577	PRINTS	Ethylene responsive element binding protein signature	273	284	IPR001471	GO:0003700\|GO:0006355
	Ahy1g1103	577	SUPERFAMILY	DNA-binding domain	271	340	IPR016177	GO:0003677
	Ahy1g1103	577	SUPERFAMILY	DNA-binding domain	373	433	IPR016177	GO:0003677
	Ahy1g1103	577	ProSiteProfiles	AP2/ERF domain profile.	272	338	IPR001471	GO:0003700\|GO:0006355
	Ahy1g1103	577	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	178	575	-	-
	Ahy1g1103	577	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	178	575	-	-
	Ahy1g1103	577	SMART	rav1_2	374	438	IPR001471	GO:0003700\|GO:0006355
	Ahy1g1103	577	SMART	rav1_2	272	344	IPR001471	GO:0003700\|GO:0006355
	Ahy1g1103	577	ProSiteProfiles	AP2/ERF domain profile.	374	432	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy1g1103	Ahy-Chr1	22752482	22758063	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy1g1103	1	577	AP2-EREBP Transcription Factor Family	AT4G37750	48.792	6.26e-164	477

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Ahy1g1103		AP2	2.10E-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy1g1103	K09285		-	gmx:100792451	628.246

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy11g1078	11	29752022	29757730	Ahy1g1103	1	22752482	22758063	hybridization
	Ahy15g0528	15	6507264	6510483	Ahy1g1103	1	22752482	22758063	PCT
	Ahy1g1103	1	22752482	22758063	Ahy15g0528	15	6507264	6510483	PCT