Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1088 ATGGAGCTTAAGCACCAACTTGGTCTTCTTTGCGTTATATTGCTTTTACCGGCACTAAGCATCGCCACTAATAATGACTATTGCCCTTTGAATTCTTATAAGAACTCTAGGGCATCCTATTATGGTACCCGTGATGGTTATGGGACTCCAAGTGGAGCATGTGGATTTGGCGAATATGGAAGGATGGTCAATGATGGCAAGGTTGCAGCGGTATCTGGGCTATGGAAAGGTGGAAGTGGCTGCGGTGCATGCTATCAGGTTAAATGTAAAGTACCAATATTGTGCAAAGTCAACGGGGTAACCGTGGTGGCAACAGATTATGGTGAGGGAGACAGAACAGATTTCATACTGAGCCCACGCGCTTTTGAGAGTTTGGGTGTGAGTCTTAATGCATCTGAAGAGCTCAAAAAATACGGTACTCTTGATATTGCATACAAGAGAGTTCCTTGCAATGGCAAGATTGTTATTAAGATCCACGAAAGTAGCAGCAACCCTGGATACTTTGCTATGGTGCTTCTCAGCCATGGTGGATTATACGATGTCACTAGTGTCGAATTCTGGGAGGATTCACGCAAACAATGGAGTCCATTGCGTAGAGCTTATGGGGCAGTGTTTGACTATGCTAACCCACCAAGGGGTCCACTCTTCTTGAGGTTCCAAGTGACTGGTTGTTATGGAGCTTATTGGCAAAAACTAAATAAACCTATCCCTGCTAATTGGCAGCCGAAAATGATTTTTAACTTTTGA 747 0.4404 MELKHQLGLLCVILLLPALSIATNNDYCPLNSYKNSRASYYGTRDGYGTPSGACGFGEYGRMVNDGKVAAVSGLWKGGSGCGACYQVKCKVPILCKVNGVTVVATDYGEGDRTDFILSPRAFESLGVSLNASEELKKYGTLDIAYKRVPCNGKIVIKIHESSSNPGYFAMVLLSHGGLYDVTSVEFWEDSRKQWSPLRRAYGAVFDYANPPRGPLFLRFQVTGCYGAYWQKLNKPIPANWQPKMIFNF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1088 248 Pfam Expansin C-terminal domain 155 222 IPR007117 -
Ahy1g1088 248 Pfam Lytic transglycolase 72 137 IPR009009 -
Ahy1g1088 248 Gene3D - 18 151 IPR036908 -
Ahy1g1088 248 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Ahy1g1088 248 Gene3D - 152 247 IPR036749 -
Ahy1g1088 248 PANTHER EXPANSIN-B3 3 245 - -
Ahy1g1088 248 SUPERFAMILY Barwin-like endoglucanases 24 151 IPR036908 -
Ahy1g1088 248 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Ahy1g1088 248 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Ahy1g1088 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Ahy1g1088 248 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Ahy1g1088 248 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Ahy1g1088 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 151 IPR007112 -
Ahy1g1088 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 248 IPR007117 -
Ahy1g1088 248 PANTHER EXPANSIN-B1-LIKE PROTEIN 3 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1088 Ahy-Chr1 21780604 21782926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1088 1 247 Expansin Gene Family AT4G17030 45.455 4.89e-71 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1088 - - adu:107485050 397.512