Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1080 ATGGGTGCTCCTAAACAGAAATGGACTGCAGAAGAAGAAGCAGCACTTAAAGCTGGAGTAGTCAAACATGGAGCAGGAAAATGGCGCACTATACTTACAGATCCAGAGTTTAGTGCCATCTTGCGCATGCGCTCCAATGTAGACCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCCAAGCTAGCCCTTAAAAAGAACTTACTACTACCAGCCCCTAAAATCGACAACAATCATATGGCCTTGAGTACAGCAGTTCGACATGATGAAAATGTTCTCGAAACTAAGCCCCTAGCAATATGTGGTCTGTCATTGCCATCTCATAATTCAAAACAACAATTATCAAGGTTGGATGATCATATATTAGAGGCTATTATCAGTTTGAAGGAGCCAAGGGGTTCTGACAGGAATGCCATTGCTTCATACATAGAGGAAAATTATCAATCTCCTACAAACCTTGCAAAGTTACTGCGAACAAGACTGAAGCATATGGTGGATATTGGCAAAATAATCAAGGTACAACAGAGGTACAAGATTAGTCCAAGTTTGACAGGCTCTGAGAAAAGAAGATACTCTTCTTCCACTTTACTGCAGGAAGGGAGGCCCAGAGATTCTCCAGAAGCAGAGAAGAGTCATGATGTCAACATCCTTTCAAAATCCCAAGTTGATGCGGATATATCGAAAGCAAAGAGCATGACAGCTCAAGAGGCAGCTGTGGCAGCTGCAAAGGCAGTTGCAGAGGCAGAAGCCGCCATTGCTGAAGCAGAGTTAGCAGCGAGGGAGGCAGAGGCTGCAGAAGCTGAGGCAGAGGCTGCTCATGTGTTTGCAAAAGCAGCAATGAAGGCACTAAAATGCAAAACATCTCTTATCTGGTAG 900 0.4422 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLLPAPKIDNNHMALSTAVRHDENVLETKPLAICGLSLPSHNSKQQLSRLDDHILEAIISLKEPRGSDRNAIASYIEENYQSPTNLAKLLRTRLKHMVDIGKIIKVQQRYKISPSLTGSEKRRYSSSTLLQEGRPRDSPEAEKSHDVNILSKSQVDADISKAKSMTAQEAAVAAAKAVAEAEAAIAEAELAAREAEAAEAEAEAAHVFAKAAMKALKCKTSLIW* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1080 299 Pfam linker histone H1 and H5 family 126 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy1g1080 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy1g1080 299 MobiDBLite consensus disorder prediction 191 208 - -
Ahy1g1080 299 MobiDBLite consensus disorder prediction 191 220 - -
Ahy1g1080 299 CDD SANT_TRF 6 57 - -
Ahy1g1080 299 Gene3D - 2 59 - -
Ahy1g1080 299 PANTHER MYB TRANSCRIPTION FACTOR 1 295 - -
Ahy1g1080 299 SUPERFAMILY "Winged helix" DNA-binding domain 120 198 IPR036390 -
Ahy1g1080 299 Gene3D - 118 203 IPR036388 -
Ahy1g1080 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Ahy1g1080 299 Coils Coil 246 280 - -
Ahy1g1080 299 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Ahy1g1080 299 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Ahy1g1080 299 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Ahy1g1080 299 SMART sant 4 59 IPR001005 -
Ahy1g1080 299 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ahy1g1080 299 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1080 Ahy-Chr1 21432055 21436446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1080 1 294 Single Myb Histone (SMH) Gene Family AT5G67580 54.054 1.19e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ahy1g1080 Linker_histone 6.00E-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1080 K09422 - gmx:100779583 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1100 11 31380364 31384680 Ahy1g1080 1 21432055 21436446 hybridization
Ahy15g0545 15 6759126 6763761 Ahy1g1080 1 21432055 21436446 PCT
Ahy1g1080 1 21432055 21436446 Ahy15g0545 15 6759126 6763761 PCT