Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1078 ATGGATACGCTGTTTAGGCTAGATCCACCGTCCCTAAACTCCACAACAACATCATCAACCAACTCTCATCAAAATTATTATTATTATTATGACCAACACCAACTAGAGGAAGAAGCTGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCTTCTTCTTCAAAGCAACAAGAACAATATTACCCTTATTATAACCAATTACAACCCCACTACCATTTATTATCATCCACTACCACTACTCATCATGATTTATCGTCAACATCATTCTTACCACCCACTCCACCACCATCAGATTTCAACTTTGAATTCTCATCAGGCTCGTGGGCACCCAACATCCTCCTCGACACCGCACGTGCCATCGCTGACAACAACACCACGCGACTGCATCAACTCCTATGGATGCTCAACGAGCTAAGCTCTCCATACGGCGACACAAACCAAAAACTCGCCGCGTATTTTCTTCAAGCCTTGTTCAGCCGCATAACCACCGTCGGCGAACGAACCTACCGAACCTTAACGTTAGCTTCGGACAAGACTTGCTGTTTCGAGTCCACCAGAAAGACGGTTCTCAAGTTCCAGGAGGTTAGTCCCTGGACCACGTTTGGACACGTGGCGTCCAATGGCGCCATCTTAGAGGCTCTCGATGGGGAGCTCAACTTGCACATTGTGGATTTCAGCAACACGTACTGCACACAGTGGCCAACGCTTCTTGAAGCCTTGGCCACTCGTAGCGACGACACCCCGAACCTCCGCTTAACCACCGTCGTCACCACCAGACCTGGTGACTCTGGCGACGCTGTTCAGAGGGTCATGAAGGAAATAGGTACAAGGATGGAGAAATTTGCGAGGCTAATGGGAGTTCCGTTCAAATTCAACGTCGTTTGCCACGTCGGCGATCTCTCCAATCTCAACTTCGGCGATTTGGACATCAAGAACGAGGAGGCCTTAGCCATCAACTGCGTGAACACGCTCCACGCGATCACACCCGTCGGGAACCACCGTGACACGTTGATATCATCGCTGGCGAGGCTAAACCCTCGGATCGTGACGGTGGTGGAAGAAGAAGCGGATCTGGACGTTGGCGTCGAAGGCCAGGAGTTCCTTAAAGGGTTCGAGGAATGCGTGAAGTGGTTTAGGGTTTACATGGAGGCGCTGGATGAGAGCTTTACGAGGACGAGTGGGGAGAGGCTGATGCTGGAAAGGGCGGCGGGGAGGGCGATTGTGGACCTGGTGGCGTGTACGGCGGCGGAATCGGTGGAGCGGAGGGAGACGGCCGTGAAATGGTCGCAGAAAATGAGGGAAGGTGGAGGGTTGAATAGGATGCCGTTTAGCGAGGAGGTGTGTGATGACGTCAGAGCATTGCTGAGAAGGTATAGGGAAGGGTGGTCGATGGCAGAGTGTTCCGATGACGGAGTATTTCTTTGTTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAAGCCGTAG 1482 0.5155 MDTLFRLDPPSLNSTTTSSTNSHQNYYYYYDQHQLEEEAEEECFNFFMDEEDLSSSSSKQQEQYYPYYNQLQPHYHLLSSTTTTHHDLSSTSFLPPTPPPSDFNFEFSSGSWAPNILLDTARAIADNNTTRLHQLLWMLNELSSPYGDTNQKLAAYFLQALFSRITTVGERTYRTLTLASDKTCCFESTRKTVLKFQEVSPWTTFGHVASNGAILEALDGELNLHIVDFSNTYCTQWPTLLEALATRSDDTPNLRLTTVVTTRPGDSGDAVQRVMKEIGTRMEKFARLMGVPFKFNVVCHVGDLSNLNFGDLDIKNEEALAINCVNTLHAITPVGNHRDTLISSLARLNPRIVTVVEEEADLDVGVEGQEFLKGFEECVKWFRVYMEALDESFTRTSGERLMLERAAGRAIVDLVACTAAESVERRETAVKWSQKMREGGGLNRMPFSEEVCDDVRALLRRYREGWSMAECSDDGVFLCWKDQPVVWASAWKP* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1078 493 ProSiteProfiles GRAS family profile. 104 492 IPR005202 -
Ahy1g1078 493 PANTHER PROTEIN SHORT-ROOT 1 492 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Ahy1g1078 493 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 492 IPR005202 -
Ahy1g1078 493 Pfam GRAS domain family 116 492 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1078 Ahy-Chr1 21358302 21360796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1078 26 493 GRAS Transcription Factor Family AT4G37650 59.839 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ahy1g1078 GRAS 5.70E-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1078 - - gmx:100778524 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1103 11 31600649 31603214 Ahy1g1078 1 21358302 21360796 hybridization
Ahy15g0550 15 6796876 6799019 Ahy1g1078 1 21358302 21360796 PCT
Ahy1g1078 1 21358302 21360796 Ahy15g0550 15 6796876 6799019 PCT