Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g1056 ATGAGTTGCAACGGTTGCCGAGTTCTCCGAAAGGGTTGCAGCGAGACATGCATGTTGCGCCCTTGCTTGCAGTGGATCGAGACACCCGAGGCCCAAGGACACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCTTTCATTTCCAATGTACCGGAGGCCCAAAGACCCGCTCTGTTTCAGTCACTGCTGTTTGAAGCATGTGGAAGAACCGTGAATCCGGTTAATGGTGCTGTGGGGCTCTTGTGGACGGGGAACTGGCACGTGTGCCAGGCGGCAGTGGAGACGGTGCTCCGCGGAGGCACGTTGAGGCCCTCGCCGGAGTTTATGGGGATGGAATCGGCGGGTCCGGTGGTGGCCACCGACGAAGCATCGGAGGCAGAGGTCACGTGCGGTGACATATGGAAGAAGGTTCGAGATCCGAACCCGAGTTGCAGGTTCACAAGCTCACGGTCTACACGTGTTGCTGCCGGCGCCGCCGGGAAGCGTAAGCGGCTGGAGGAGGTGACGAAGGTCCAGACGGCGGCTGATCTTGATCTTCGTCTGACGCCGATCTTCCTTCAGAAGATCGCCGATTACCGGCGCCGTCCAGGATCGCCGTCGATGACGTCGGAGGAGTCCGTGACGACCACGGCGGAGATTGGAGGAGATCAGTGGGGTCACAGCGGTGAACGGAAAGTTCTCAACCTTTTCATTTGA 711 0.5977 MSCNGCRVLRKGCSETCMLRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPSPEFMGMESAGPVVATDEASEAEVTCGDIWKKVRDPNPSCRFTSSRSTRVAAGAAGKRKRLEEVTKVQTAADLDLRLTPIFLQKIADYRRRPGSPSMTSEESVTTTAEIGGDQWGHSGERKVLNLFI* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g1056 236 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Ahy1g1056 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 236 - -
Ahy1g1056 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 236 - -
Ahy1g1056 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g1056 Ahy-Chr1 20123570 20125011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g1056 1 236 AS2 family AT4G37540 57.937 3.01e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy1g1056 LOB 4.50E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g1056 - - gmx:100816480 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1131 11 33018008 33019404 Ahy1g1056 1 20123570 20125011 hybridization
Ahy1g1056 1 20123570 20125011 Ahy5g0569 5 7152919 7154331 PCT