LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy1g1016	ATGCCTCCAACTCCACAAGAACACGAGCAACCCCTCTTACTGGACTCACCGCAACAAGCCGATGAGTTAGAAGAAACAGCCTACGATTCTTCCGAGAAGATCGTGGTAGTTGGAATCGACGAGTCAGAGTACGAGTCCGGGAACTGGGCCCGGGCCCCACCGTTCTCATGGAGGAAGCTATGGCTATTCACGGGCCCGGGCTTTCTCATGAGCATAGCGTTCTTGGACCCAGGGAACCTGGAAGGAGACCTGCAGGCCGGTGCCATTGCGGGGTACTCGCTGCTGTGGCTGCTCATGTGGGCCACAGCCATGGGCCTGCTGATCCAGCTGCTGTCGGCCCGGCTCGGCGTGGCAACGGGCAGGCACCTGGCGGAGCTTTGTCGGGAGGAGTACCCGACGTGGGCTCGGAACGTGCTGTGGGTTATGGCTGAGGTGGCACTTATTGGTTCTGATATTCAGGAGGTTATTGGTAGTGCTATTGCTATAAGGATCCTTAGTAATGGCTTTGTGCCTCTTTGGGCTGGAGTCACCATAACTGCTCTTGATTGTTTTGTTTTTCTTCTTCTGGAGAATTATGGTGTGCGGAAACTGGAAGCTGTTTTTGCTGTTCTCATTGCGATAATGGCGGTTGCCTTTGCATGGATGTTTGGTGAAACAAAGCCCAGTGGCAAGGAATTGCTTCTTGGTATTTTGATTCCGAAGCTTAGCTCTAGAACTATACAGCAGGCTGTTGGAGTTGTGGGCTGCATTATTATGCCTCATAATGTGTTCTTGCACTCTGCGCTTGTTCAATCAAGGAGGGTTGATCATCGGAATAAAGGCCGAGTTCAAGAAGCTCTTAATTATTACTCAATAGAGTCCACCATGGCCCTTATAGTCTCCTTTGTTATTAATATATTTGTCACAACCGTTTTTGCTAAGGGGTTCTATGGTACCGAACTAGCAAACAACATTGGTCTTGTAAATGCAGGACAGTATCTTCAGGAGCAGTATGGGGGTGGATTATTTCCAATACTGTATATATGGGGTATTGGGTTATTAGCAGCAGGACAAAGTAGCACTCTTACGGGTACCTATGCAGGTCAATTTATCATGGGGGGTTTCCTAAATTTAAGGTTGAAAAAATGGATGAGAGCACTAATTACACGAAGTTTTGCAATTATTCCAACTATGATAGTTGCTCTTATTTTCGACACCTCTGAGCAATCGTTAGATGTTCTGAATGAGTGGCTTAATGTTCTTCAGTCAGTTCAAATCCCCTTTGCACTTATTCCCTTGCTTTGTTTGGTGTCAAAGGAGCAGATAATGGGAAGTTTCAGAATTGGCCCCGTCCTCCAGATTATTTCATGGCTCGTGACTGTTCTGGTGATAGTGATTAACGGCTACCTTCTGCTGGAATTCTTCTCGCACGAAGTGAATGGCGCAATAGTCGGCACTGTAGTGTGCGTGCTAACAGCTGCATATGTTGCATTCATAGTATACCTTATTTCACGGGCCGTTACGTATTCACCTTGGCAAAGTGTGACACAGCGAAAGTCAAATACTAACTCAGAGTTGGAGTAA	1563	0.4722	MPPTPQEHEQPLLLDSPQQADELEETAYDSSEKIVVVGIDESEYESGNWARAPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARNVLWVMAEVALIGSDIQEVIGSAIAIRILSNGFVPLWAGVTITALDCFVFLLLENYGVRKLEAVFAVLIAIMAVAFAWMFGETKPSGKELLLGILIPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRRVDHRNKGRVQEALNYYSIESTMALIVSFVINIFVTTVFAKGFYGTELANNIGLVNAGQYLQEQYGGGLFPILYIWGIGLLAAGQSSTLTGTYAGQFIMGGFLNLRLKKWMRALITRSFAIIPTMIVALIFDTSEQSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFRIGPVLQIISWLVTVLVIVINGYLLLEFFSHEVNGAIVGTVVCVLTAAYVAFIVYLISRAVTYSPWQSVTQRKSNTNSELE*	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy1g1016	520	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	19	515	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	PRINTS	Natural resistance-associated macrophage protein signature	169	188	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	PRINTS	Natural resistance-associated macrophage protein signature	350	369	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	PRINTS	Natural resistance-associated macrophage protein signature	139	165	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	PRINTS	Natural resistance-associated macrophage protein signature	194	215	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	PRINTS	Natural resistance-associated macrophage protein signature	412	431	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	PRINTS	Natural resistance-associated macrophage protein signature	243	266	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	PRINTS	Natural resistance-associated macrophage protein signature	378	395	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	Hamap	Divalent metal cation transporter MntH [mntH].	46	468	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	Pfam	Natural resistance-associated macrophage protein	81	442	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	58	436	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ahy1g1016	520	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	19	515	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy1g1016	Ahy-Chr1	18463160	18467062	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy1g1016	5	505	Inorganic Solute Cotransporters	AT2G23150	76.938	0.0	787

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy1g1016	K21398		-	gmx:100807811	862.833

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy11g1022	11	23323166	23326306	Ahy1g1016	1	18463160	18467062	hybridization
	Ahy5g0591	5	7478196	7481373	Ahy1g1016	1	18463160	18467062	PCT
	Ahy1g1016	1	18463160	18467062	Ahy5g0591	5	7478196	7481373	PCT