Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0972 ATGTGGGATCTCAATGACTCACCCGATCGGAGGAGAAAGGTTGAGGAATCCGAAGAAGGTTGCTCTTCTCTCAAGAACTCCATAGACGGAGACGACGATAACAACAACAACAACAATAATAATCATAAGGGAAAGAGAGTTGGATCTGTTTCCAATTCAAGCTCCTCCGCAGTTGTCATCGAAGACGGGTCAGAAGAAGAAGAACAACAACAAGAAGAAGGTAGCGTCGTAAGAGCAACAGCGGACATGAAGAAGAGTAGAAGAAGCAAGATATTCGGGTTCTCAGTAACCCACGGTGATGATGATGAAGAAGATGAAGATGAAGATTCCATGGATAGTGAGAACCACAGCCAGGTAGTGACTCGGCAGTTTTTCCCCATGGAGGAGGCTGATATAGCCGCCGCATCATCACCGGCTGGAAGCGGCGGTGACGGTGACGGCGACGGCGACGGAGGTGGCTCTACTTTCCCTCGTGCCCACTGGGTAGGCGTGAAATTTTGCCAATCAGAAACACTTGGTGCTGGAAAATCATCACTGGAAGCTTCTCAACCCATGAAAAAAAGTCGCCGAGGACCACGGTCAAGAAGCTCACAGTACAGAGGAGTCACTTTTTACAGAAGAACCGGTCGATGGGAGTCTCATATTTGGGACTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACTGCACATGCAGCTGCTCGTGCATACGATAGAGCAGCGATTAAGTTCCGAGGAGTGGAGGCAGACATAAACTTTAACATTGAAGACTACGAAGAAGACTTGAAGCAGATGAGCAATCTGACTAAGGAAGAGTTTGTGCACGTTCTTCGCCGACAAAGCACTGGGTTTCCAAGAGGAAGCTCTAAATATAGAGGTGTAACTTTGCACAAATGCGGAAGATGGGAAGCTCGAATGGGACAATTTTTAGGGAAAAAGTACGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCCTATGATAAAGCAGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTACGAAAATGAGCTTAATTCCGAACCCACAGGTAATGCTGCAGATCACAATCTAGATTTAAGTTTGGGCAATTCAAGTTTCAAATCTAGCAACAATAATCGAGCATTGGGGAATCACACCACAAATGTTCAAGATCATCACCAGCAGCTCATGCCATCTGAATCCAATTGGCGAAATGGTGCAAGCAAGCCTAAGCTGGTGAATATCCTACCAAAACCGTGTAATAGAAACATGGAAGCACATGGAGGAAGGGATTTGCACGGAGAGAGTGAAGCCTTGAGGATGCTGAGTCAAACCCACATCCATTCTACTACTTGTTCAGCATCTAATGAAACGCAAAGATATGGACCCTACAGGTCCCCAGGGGAGCCTCAAATGCTTCACAATTTTGCACATCTTCAACCACCAAATTTTTATTTCTCCAGCAGCAGTAGTAATGGGGGTCGCATTGGGAATGATCTTTCATTATCAATGGCGGATCATCATCAACAACAGTTGCAACCAGGACCTCCACAGCATTATTTGGCCACTGCTGCAGCATCATCAGGATTCCCACCACAGATTATTAGACCCTCTTCTCATCACCAAGGTTGGCTGCAGAAAAATGGCTTCCACACAATTATGAGACCCTCCTAA 1686 0.4614 MWDLNDSPDRRRKVEESEEGCSSLKNSIDGDDDNNNNNNNNHKGKRVGSVSNSSSSAVVIEDGSEEEEQQQEEGSVVRATADMKKSRRSKIFGFSVTHGDDDEEDEDEDSMDSENHSQVVTRQFFPMEEADIAAASSPAGSGGDGDGDGDGGGSTFPRAHWVGVKFCQSETLGAGKSSLEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSEPTGNAADHNLDLSLGNSSFKSSNNNRALGNHTTNVQDHHQQLMPSESNWRNGASKPKLVNILPKPCNRNMEAHGGRDLHGESEALRMLSQTHIHSTTCSASNETQRYGPYRSPGEPQMLHNFAHLQPPNFYFSSSSSNGGRIGNDLSLSMADHHQQQLQPGPPQHYLATAAASSGFPPQIIRPSSHHQGWLQKNGFHTIMRPS* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0972 561 Gene3D AP2/ERF domain 289 348 IPR036955 GO:0003700|GO:0006355
Ahy1g0972 561 Gene3D AP2/ERF domain 197 256 IPR036955 GO:0003700|GO:0006355
Ahy1g0972 561 PRINTS Ethylene responsive element binding protein signature 329 349 IPR001471 GO:0003700|GO:0006355
Ahy1g0972 561 PRINTS Ethylene responsive element binding protein signature 291 302 IPR001471 GO:0003700|GO:0006355
Ahy1g0972 561 SUPERFAMILY DNA-binding domain 197 255 IPR016177 GO:0003677
Ahy1g0972 561 MobiDBLite consensus disorder prediction 78 98 - -
Ahy1g0972 561 ProSiteProfiles AP2/ERF domain profile. 290 347 IPR001471 GO:0003700|GO:0006355
Ahy1g0972 561 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 559 - -
Ahy1g0972 561 SMART rav1_2 290 353 IPR001471 GO:0003700|GO:0006355
Ahy1g0972 561 SMART rav1_2 198 260 IPR001471 GO:0003700|GO:0006355
Ahy1g0972 561 SUPERFAMILY DNA-binding domain 289 349 IPR016177 GO:0003677
Ahy1g0972 561 MobiDBLite consensus disorder prediction 27 60 - -
Ahy1g0972 561 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 559 - -
Ahy1g0972 561 MobiDBLite consensus disorder prediction 175 199 - -
Ahy1g0972 561 MobiDBLite consensus disorder prediction 1 26 - -
Ahy1g0972 561 CDD AP2 198 255 IPR001471 GO:0003700|GO:0006355
Ahy1g0972 561 MobiDBLite consensus disorder prediction 1 117 - -
Ahy1g0972 561 MobiDBLite consensus disorder prediction 134 155 - -
Ahy1g0972 561 CDD AP2 289 349 IPR001471 GO:0003700|GO:0006355
Ahy1g0972 561 ProSiteProfiles AP2/ERF domain profile. 198 254 IPR001471 GO:0003700|GO:0006355
Ahy1g0972 561 Pfam AP2 domain 198 246 IPR001471 GO:0003700|GO:0006355
Ahy1g0972 561 Pfam AP2 domain 289 338 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0972 Ahy-Chr1 15825688 15831488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0972 1 376 AP2-EREBP Transcription Factor Family AT4G36920 62.371 2.48e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ahy1g0972 AP2 4.00E-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0972 K09284 - gmx:100792442 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0966 11 20264554 20270093 Ahy1g0972 1 15825688 15831488 hybridization
Ahy5g0617 5 7862871 7865961 Ahy1g0972 1 15825688 15831488 PCT
Ahy1g0972 1 15825688 15831488 Ahy5g0617 5 7862871 7865961 PCT