Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0832 ATGCCGAAGGTTAAAGCCGACGCGAAAGCTGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGAACGGGAAGGAAGCAGGCTAAGAAAGCTAAAGATCCTAACAAGCCGAAGAGGCCTCCAAGCGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAACAGTACAAGAAGGAGCACCCAAGCAACAAATCCGTTGCAGTTGTTGGCAAGGCTGGTGGTGACAGGTGGAAATCAATGTCTGATGCTGATAAAGCTCCCTACCAAGCTAAGGCAGAGAAAAAGAAAGAAGAGTATGAAAGGAGTATGCAAGCCTACAACAAAAAACAGGAGAGCAAGGGTGCTTCTGAGGAAGATGAATCTGACAAGTCAAAGTCTGAAGTAAATGATGAGGATGAGGATGAGGAGGATGATGATGACGAGTGA 420 0.4714 MPKVKADAKAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPSNKSVAVVGKAGGDRWKSMSDADKAPYQAKAEKKKEEYERSMQAYNKKQESKGASEEDESDKSKSEVNDEDEDEEDDDDE* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0832 139 CDD HMGB-UBF_HMG-box 36 87 - -
Ahy1g0832 139 SMART hmgende2 35 106 IPR009071 -
Ahy1g0832 139 MobiDBLite consensus disorder prediction 122 139 - -
Ahy1g0832 139 MobiDBLite consensus disorder prediction 1 42 - -
Ahy1g0832 139 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 36 105 IPR009071 -
Ahy1g0832 139 Pfam HMG (high mobility group) box 36 105 IPR009071 -
Ahy1g0832 139 Gene3D High mobility group box domain 20 132 IPR036910 -
Ahy1g0832 139 MobiDBLite consensus disorder prediction 54 139 - -
Ahy1g0832 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 137 IPR031061 -
Ahy1g0832 139 SUPERFAMILY HMG-box 22 106 IPR036910 -
Ahy1g0832 139 MobiDBLite consensus disorder prediction 1 36 - -
Ahy1g0832 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 137 - -
Ahy1g0832 139 MobiDBLite consensus disorder prediction 75 121 - -
Ahy1g0832 139 Coils Coil 87 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0832 Ahy-Chr1 12197665 12199477 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ahy1g0832 HMG_box 1.20E-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0832 K25507 K22507 ahf:112797235 214.157