Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0742 ATGGCGGAAGAGAGGTTCACCGGCGTTGTTATGTGGTTCAACAACACCAAGGGCTTCGGCTTCATCAAGCCCGACGATGGCGGCGAAGATCTCTTCGTCCACCAGTCTTCCATCAGATCCGACGGTTACCGCACTCTCCACGAAGGCGATCGCGTCCAGTTCTCCATCGCCACCGGCGACAACCACAAGACCAAGGCCGTTGATGTAACTGCTCCCGACGGCAATCCCCTACACTCTCGTCCCAAGGAATCCGGCGGATCCGGATTTGGCGCCGGATGGAGGCGAAACGGCGGCGCCAGTGGAGGTGGAGGTGGTGCTGCTGGATCAGGTGGCGCCGGGTGCTACCACTGCGGCGAAGTCGGACACCTGGCTAGGGATTGCAACCGGAGCAACAATTCTGGTGGCGCTGGTGGCGGTAGTGGTGGTGCATGTTTTAATTGCGGCGGATTTGGGCATCTCGCTAGGGATTGCTTGCGAGGAAGCGGTGGCGGTAACGGTAATGGTCACAGTGGTGGTGGTGGTGGTGGTGGAGGTGTCGGTGGTGTTTCGTGCTTTAGATGCGGTGGATTTGGTCACATGGCGAGGGACTGTGCTACCGCGAGAACTGGCGGCGGTGCAGGTGGCGGCGCTGGTGGTGGTGGTTGCTATAGGTGCGGTGAGGTTGGTCACTTGGCTAGGGATTGCAGCAATGAAGGTGGAAGGTATGGTGGCGGAGGCGGCGGTGGCAATGGTAATGGTTCTAGAAGCACTTGCTTCAATTGTGGTAAGCCTGGGCATTTTGCAAGGGAGTGCGTTGAAGCCTCTGGTTGA 810 0.5901 MAEERFTGVVMWFNNTKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLHEGDRVQFSIATGDNHKTKAVDVTAPDGNPLHSRPKESGGSGFGAGWRRNGGASGGGGGAAGSGGAGCYHCGEVGHLARDCNRSNNSGGAGGGSGGACFNCGGFGHLARDCLRGSGGGNGNGHSGGGGGGGGVGGVSCFRCGGFGHMARDCATARTGGGAGGGAGGGGCYRCGEVGHLARDCSNEGGRYGGGGGGGNGNGSRSTCFNCGKPGHFARECVEASG* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0742 269 Gene3D - 242 269 - -
Ahy1g0742 269 Gene3D - 140 167 - -
Ahy1g0742 269 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 106 - -
Ahy1g0742 269 PANTHER COLD SHOCK DOMAIN PROTEIN 2 167 268 - -
Ahy1g0742 269 SUPERFAMILY Retrovirus zinc finger-like domains 174 231 IPR036875 GO:0003676|GO:0008270
Ahy1g0742 269 SMART c2hcfinal6 183 199 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 SMART c2hcfinal6 143 159 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 SMART c2hcfinal6 214 230 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 SMART c2hcfinal6 250 266 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Ahy1g0742 269 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Ahy1g0742 269 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Ahy1g0742 269 ProSiteProfiles Zinc finger CCHC-type profile. 215 230 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Ahy1g0742 269 Pfam Zinc knuckle 214 229 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 Pfam Zinc knuckle 113 127 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 Pfam Zinc knuckle 250 264 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 Pfam Zinc knuckle 143 157 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 Pfam Zinc knuckle 183 198 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Ahy1g0742 269 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Ahy1g0742 269 ProSiteProfiles Zinc finger CCHC-type profile. 251 264 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 SMART csp_8 7 72 IPR011129 GO:0003676
Ahy1g0742 269 PANTHER COLD SHOCK DOMAIN PROTEIN 2 98 173 - -
Ahy1g0742 269 PANTHER COLD SHOCK PROTEIN 2 1 106 - -
Ahy1g0742 269 ProSiteProfiles Zinc finger CCHC-type profile. 144 157 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 ProSiteProfiles Zinc finger CCHC-type profile. 114 127 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 Gene3D - 175 239 - -
Ahy1g0742 269 PANTHER COLD SHOCK PROTEIN 2 98 173 - -
Ahy1g0742 269 PANTHER COLD SHOCK PROTEIN 2 167 268 - -
Ahy1g0742 269 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Ahy1g0742 269 Gene3D - 91 139 - -
Ahy1g0742 269 ProSiteProfiles Zinc finger CCHC-type profile. 184 197 IPR001878 GO:0003676|GO:0008270
Ahy1g0742 269 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
Ahy1g0742 269 SUPERFAMILY Retrovirus zinc finger-like domains 233 265 IPR036875 GO:0003676|GO:0008270
Ahy1g0742 269 MobiDBLite consensus disorder prediction 66 102 - -
Ahy1g0742 269 Gene3D - 1 70 IPR012340 -
Ahy1g0742 269 SUPERFAMILY Retrovirus zinc finger-like domains 108 159 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0742 Ahy-Chr1 11201735 11202849 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Ahy1g0742 CSD 5.30E-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0742 K09250 - gmx:106796585 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0053 11 556389 557570 Ahy1g0742 1 11201735 11202849 hybridization