Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0734 ATGGATCCTGGTCGCTATGGTCTTCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTCCATGAGCCAAATTATCGGGTTGGGGGTGCTTATGAGGATAGACGCTTTGTAGATGAAAGATATCCAAGGGATGCCATATACCAGAGAAATGCTTTCCATCGTGACATTTTGGATAGGGAGGGCTATATGCCACCAGGACCTCCTGTTGGCCACTGGAATCAATCCAAAAGGAGAGGTTATGAGGAAGATTATCCAATGGACAGAGAATCTAGACGTTTTCAGAGGCCTTATCATGAGCCGTATAATCAGATTGATGCCTACAGAGAAGCCGATATTGACACGTTCCCAGAATATGATAAGTTTCGAGATGGTTATGGCAGCATTGAAAATTATGGGGATCGAGGATATGATAAACCTGCCAGGTTTGGAGGACATGACCGTGATGATTATGCATATGATGACTATGGCTACAAGTCCCGTGCTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGCCGCCATAGTTATGATTCTGATTATGAAAGAGGCAGTAGAAGAGATAGTAACTGGAGGCGACGTGGATCACGTGATCGAGAACATGATAGAAGAGGTCTTAGTCGGGAAAGAGATGTAAGCCCGCGTAAGAGGCGTGAGCATTCTCATTCTAGGTCCCGATCCCGTTCCCGGTCCCGGTCCAAATCTCAGTCCCATTCCCGATCCCGTTCCCAGTCTCGTGGATACGACGATCATCCAAGATCAAGGTCCCCTCGAGGTCGAAGCCATAGTCGGAGTTATAGAGAAGATAGCTATAGTGACAGTCGATACGATAGAAGTGAAAGACGCAGGGATCGTGAGGAAAAACGTCAGCGTGAACATTATTCAGTGGCCCCATCTGCAACTATTGTTGTGAAAGGTCTCTCACAGAAAACTACTGAGGAGGATCTGTACCAAATACTTGCGGAGTGGGGACCCCTTCGTCATGTTCGTGTTATAAAGGAAAGAAATTCTGGCATTTCTCGGGGATTTGCGTTTATCGATTTTCCTTCTGTGGGAGCCGCACAAGCAATGATGGACAAGCTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTTTGAATATAGTAGTAAACCTACTGGTGGTCCAGGTCCTGATGGAGCTATGAAATCAGGCCATAATCATAAGAGCATTACAATACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGTCGTACCTCCTGTTATCAGTGTAATGAGCCACGAACTGAGGATGCTCCTGCAGCAGATGTTTCATTAACAAATTCATCAGCCATGGGGAAGAAGGGTCTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACACATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGGACTACTCTTGAGAAGAATGGACAAATTCTAAGAGTGGCATATGCTAAAAGTATCTTGGGCCCTGGATCAGGAGCACCAGGAACTTCACAATCAAGCAGCCTTGCAGCAGCTGCTATTGAGGCTGCGACATTTGCTCAACAGTATGATTCTGTGGGGTGGGCTCCAAAAGAATACAATCCCGATGATAAGCAAGCTTCTGCTCCTGAGCAAAGCACCACAGGTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCCGGTTATTATTATGATGCAGCATCTGGGTTTTACTACGATGGAAATACTGGTCTTTACTACGATGGTAACAATGGGATATGGTATACGTATGACCACCAAACTCAACAGTACATCCCTTGCACTGAACAAAATCAAAACAACACAGCTAACCAGCAGTCTGAACCTTCCAAGGCATCTGATGGTGCCAGTAGTAAAAAGGTGGTAATTTCTGCACCGGCTTCTACTGTTGCATCAGTTGAGAAGCCTGCATCATTGGCAGATGCTGTGCAGGCTGCTGCAACGGCTGCTTTAGCTGCTGAGAAGAAAGAAAAAGAGAAGGCAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTAGCAAACAAGAAAAAAATGAACAATGTGTTGTCAATGTGGAAGCAGAGGAGCCATGAAGGGCAGGCTACTCGAGTAGCCTTGGAGGACAATCAACTCTCTGTTTCCACCGATGATAGGTCATACCCTACAAAGAACAAGTTAAAAGGTGAATCTATGCCTAGGGAAACCAACGTATCTAGCTTGGGAACACATACAACTGTTATCCAGGCTGCTGGTTTGGACTCTCAGGCACAGGCACGGCCTGTTAGTAATAGTCTTGGTGGAACTATTATGGGAGTTATAAGGGGTTCAGGAAGAGGGGTTGTCAAATCAGATAGCTACCCTGGTTCTACAGCTTCTCCGTCATCATTTTCAAGTTCTTCAGCTGCAAGTGTCGATGCACAGATAAGTTCAACTCCTTTTAGAACAGATGTCTCTGCCTTGGGTTCATATACACCATCAGTGGCTGCCGGAAGTGGCAGAAGAAGGTTTTCAGAAGCGCCTAGTTCCGCTTCAATTCATAAGGAGCAACCTCAAACAACCTATAGAGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCATCATCATCGGGTGGGAATGATTTGGCTGATTATGAAATTGGGGATTCAAATCGAGATTTTGTGTCGAGGAAGGGTGATCCTATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGTGCAGTTGGAGAAGTCAACCTTGATACTTTTGAGGTGATAACAGCAGAAAAAGCACTTGATGAAAACAATGTTGGCAATCGTATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTTGGAAAGGATGGGAGTGGAATGGTAGAGCCAGTGCAGGCACAAGCCATGGAGAATAGAGCAGGACTTGGAAGTCAGCAGAAGAAGTTAGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTATAAGATGCTTATTCATAAAAAGGCACTTGCCAGGTTCCGGGAAATGAATGACAGTTAA 3180 0.4575 MDPGRYGLHQGWDNNSALEGYGAVHEPNYRVGGAYEDRRFVDERYPRDAIYQRNAFHRDILDREGYMPPGPPVGHWNQSKRRGYEEDYPMDRESRRFQRPYHEPYNQIDAYREADIDTFPEYDKFRDGYGSIENYGDRGYDKPARFGGHDRDDYAYDDYGYKSRASHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRGSRDREHDRRGLSRERDVSPRKRREHSHSRSRSRSRSRSKSQSHSRSRSQSRGYDDHPRSRSPRGRSHSRSYREDSYSDSRYDRSERRRDREEKRQREHYSVAPSATIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQAMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNHKSITIPSDWMCTICGYINFARRTSCYQCNEPRTEDAPAADVSLTNSSAMGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGAPGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQASAPEQSTTGGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYTYDHQTQQYIPCTEQNQNNTANQQSEPSKASDGASSKKVVISAPASTVASVEKPASLADAVQAAATAALAAEKKEKEKAKEIKLASKSSILANKKKMNNVLSMWKQRSHEGQATRVALEDNQLSVSTDDRSYPTKNKLKGESMPRETNVSSLGTHTTVIQAAGLDSQAQARPVSNSLGGTIMGVIRGSGRGVVKSDSYPGSTASPSSFSSSSAASVDAQISSTPFRTDVSALGSYTPSVAAGSGRRRFSEAPSSASIHKEQPQTTYRDRAAERRSLYGSSSSGGNDLADYEIGDSNRDFVSRKGDPMPFPPGVGGGRAVGEVNLDTFEVITAEKALDENNVGNRMLRNMGWQEGLGLGKDGSGMVEPVQAQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMNDS* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0734 1059 Gene3D - 272 408 IPR012677 -
Ahy1g0734 1059 Gene3D - 445 570 IPR012677 -
Ahy1g0734 1059 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 388 IPR000504 GO:0003723
Ahy1g0734 1059 Pfam OCRE domain 606 654 IPR041591 -
Ahy1g0734 1059 Gene3D - 409 440 - -
Ahy1g0734 1059 PANTHER FI21118P1 218 1056 - -
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 835 856 - -
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 251 302 - -
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 581 607 - -
Ahy1g0734 1059 Pfam G-patch domain 982 1023 IPR000467 GO:0003676
Ahy1g0734 1059 ProSiteProfiles G-patch domain profile. 981 1027 IPR000467 GO:0003676
Ahy1g0734 1059 SMART G-patch_5 979 1025 IPR000467 GO:0003676
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 877 912 - -
Ahy1g0734 1059 SMART zf_4 412 436 IPR001876 -
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 164 302 - -
Ahy1g0734 1059 SUPERFAMILY Ran binding protein zinc finger-like 405 440 IPR036443 -
Ahy1g0734 1059 ProSitePatterns Zinc finger RanBP2-type signature. 414 433 IPR001876 -
Ahy1g0734 1059 SMART rrm1_1 466 541 IPR000504 GO:0003723
Ahy1g0734 1059 SMART rrm1_1 309 384 IPR000504 GO:0003723
Ahy1g0734 1059 SUPERFAMILY RNA-binding domain, RBD 293 392 IPR035979 GO:0003676
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 592 606 - -
Ahy1g0734 1059 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 533 IPR000504 GO:0003723
Ahy1g0734 1059 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 370 IPR000504 GO:0003723
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 661 680 - -
Ahy1g0734 1059 PANTHER RNA-BINDING PROTEIN 218 1056 - -
Ahy1g0734 1059 PANTHER RNA-BINDING PROTEIN 38 215 - -
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 661 675 - -
Ahy1g0734 1059 CDD RRM1_RRM2_RBM5_like 306 386 - -
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 838 856 - -
Ahy1g0734 1059 CDD OCRE_SUA_like 602 655 IPR035623 -
Ahy1g0734 1059 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 545 IPR000504 GO:0003723
Ahy1g0734 1059 ProSiteProfiles Zinc finger RanBP2 type profile. 410 439 IPR001876 -
Ahy1g0734 1059 SUPERFAMILY RNA-binding domain, RBD 463 549 IPR035979 GO:0003676
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 130 151 - -
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 164 226 - -
Ahy1g0734 1059 CDD RRM1_RRM2_RBM5_like 463 543 - -
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 227 247 - -
Ahy1g0734 1059 MobiDBLite consensus disorder prediction 765 793 - -
Ahy1g0734 1059 PANTHER FI21118P1 38 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0734 Ahy-Chr1 11098522 11105307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0734 307 529 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 1.38e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0734 K13094 - gmx:100787998 1636.31