Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0601 ATGGAGCTTCCACATCAAAGTGGTGGAGGTGGTGATGCTCATGAAGGATCTTCATCTCAGAAGAGAATGGGAAGAGGGAAGATCGAGATCAAGCGAATCGAGAACACGACGAATCGGCAGGTGACGTTCTGTAAGAGGCGGAACGGATTGCTGAAGAAAGCTTATGAACTGTCTGTCCTTTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCAGCCGTGGCCGTTTGTATGAATATGCTAACAACAGTGTTAGGGCAACAATTGAAAGGTATAAAAAAGCATATTCTACTTCCACAAGCGCAGAATCTGTGTCTGAAGCTAACACGCAGTATTACCAGCAAGAATCAACCAAATTGAAAAGACAAATCCGAGAGATTCAAAATCTAAACAGGCACATCCTTGGTGAAGCACTCAGCACTCTAAGCCTTAAGGAACTAAAGAACCTTGAAAGCAGATTGGAGAAAGGCTTAAGCAGAGTCAGATCCAGAAAGCATGAAACATTGTTAGCTGAAGTTGAATTCATGCAAAAACGGGAAATTGAGCTGCAAAACCACAACAATTTTCTGAGAGCAAAGATAGGTGAATTTGAGAGAGCTCAACAACAACAACATCAACAGGAACAAAATTTTTTAATGGCACCTGGTGGAGGAACTATATGTGACACAATTGCATCTTCACAACAACCACCACCACCATTTGATCGCAACTTCTTTTAG 717 0.4212 MELPHQSGGGGDAHEGSSSQKRMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKAYSTSTSAESVSEANTQYYQQESTKLKRQIREIQNLNRHILGEALSTLSLKELKNLESRLEKGLSRVRSRKHETLLAEVEFMQKREIELQNHNNFLRAKIGEFERAQQQQHQQEQNFLMAPGGGTICDTIASSQQPPPPFDRNFF* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0601 238 ProSiteProfiles K-box domain profile. 109 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy1g0601 238 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Ahy1g0601 238 Gene3D - 35 120 IPR036879 GO:0003677|GO:0046983
Ahy1g0601 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 79 IPR002100 GO:0003677|GO:0046983
Ahy1g0601 238 ProSitePatterns MADS-box domain signature. 25 79 IPR002100 GO:0003677|GO:0046983
Ahy1g0601 238 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Ahy1g0601 238 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Ahy1g0601 238 PRINTS MADS domain signature 60 81 IPR002100 GO:0003677|GO:0046983
Ahy1g0601 238 Coils Coil 143 163 - -
Ahy1g0601 238 Pfam K-box region 107 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy1g0601 238 SUPERFAMILY SRF-like 24 101 IPR036879 GO:0003677|GO:0046983
Ahy1g0601 238 Coils Coil 112 132 - -
Ahy1g0601 238 ProSiteProfiles MADS-box domain profile. 23 83 IPR002100 GO:0003677|GO:0046983
Ahy1g0601 238 CDD MADS_MEF2_like 24 93 IPR033896 GO:0000977|GO:0045944
Ahy1g0601 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 217 - -
Ahy1g0601 238 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 16 217 - -
Ahy1g0601 238 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0601 Ahy-Chr1 9327130 9336701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0601 10 238 MADS-box Gene Family AT2G42830 65.532 6.40e-105 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy1g0601 K-box 1.10E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0601 K09264 - gmx:100782733 337.035