LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy1g0524	ATGTCGTATGTGCCTCCACACCTCAGAAACTCAACCACCACAACAACAACCACTACCACCACCACCACCACGGCGAAAACCTCCTCCGTAACCCAAGAAAACAACAACGACAATATCAGCAACAATGTTAACCATCAAACTAAGCTCGCATTCCCTTCTTATTCAAACTCACACTCTCACTTTCACTCCAACGGCACCAATGGAACCAATGGAACCAATGGAATCAATGGCAACGCCAACAACCACAATTCCGTGTCCCATGGTTCTCGCCGCTCCACCGCCACTCCGCAGCCGTCACGGATTTTCGCAGCTCCCGAGCCAGTTTTCCCTCACTGGCAGCCATCCGAGCGCGTTTCACGCATGAGCCCCGACCAGATTGAAGAGGTCCGCCTCCGACTTAACCTTGATGTCACTATTGCATCAGACTCTCCAGCTGCTCCTGCACCAATTGAATCATTTAGTGATATGTGTGTGCATCCAAGTATCATGAAGGATATTGCATATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTACTTGGCTGTGCTGAAACTGGTAGTGGGAAAACTGCAGCTTTCACAATTCCTATGATACAGCATTGCATGGCTCAACCTCCTATTCGGCGTGGTGATGGTCCTCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCGTTGAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAGCTAAGAGCAGGAGTTGAAATTGCTGTTGCAACCCCTGGAAGATTTATTGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATTTCTTTTGTTGTTCTAGATGAAGCAGATAGAATGCTTGATATGGGTTTTGAGCTACAGATACGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCCACTATGCCTGTGGAGATTGAAGCATTATCAAAGGAATACTTGGCTAATCCTGTACAAGTGAAAGTTGGAAAAGTCAGTAGCCCAACAACAAATGTTTCACAAACACTTGTGAAGGTCTCTGAAAATGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAAGAGGCGTCACAGGCTGAAAAATGTGGTCATCCATTTCCACTAACAATAGTGTTTGTTGAAAGAAAGACGAGATGTGACGAAATTGCTGAAGCACTTGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAAGGTGAAAGAGAGGCTGCCCTGCATGATTTTCGGAGTAGCACCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACATCGGATTGGAAGGACAGGGCGTGCAGGAACAACAGGCCTATCGACTTCATTCTACACTGATCGTGACATGTTCCTCGTTGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACAGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACACTTTGGATTGGGACCTGCTTCAATTAACATCGAAGATAAATATAGATTTATGATTACTACCTCAAACATTAAAAAGGTAGGCGCAGCTGATAGTGCTTGGGATGATTAG	1791	0.4472	MSYVPPHLRNSTTTTTTTTTTTTTAKTSSVTQENNNDNISNNVNHQTKLAFPSYSNSHSHFHSNGTNGTNGTNGINGNANNHNSVSHGSRRSTATPQPSRIFAAPEPVFPHWQPSERVSRMSPDQIEEVRLRLNLDVTIASDSPAAPAPIESFSDMCVHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCMAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFELQIREIMRNLPEKHQTLLFSATMPVEIEALSKEYLANPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQGEREAALHDFRSSTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGTTGLSTSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIALSKHFGLGPASINIEDKYRFMITTSNIKKVGAADSAWDD*	597

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy1g0524	596	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	304	312	IPR000629	-
	Ahy1g0524	596	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	382	540	IPR001650	-
	Ahy1g0524	596	Coils	Coil	540	560	-	-
	Ahy1g0524	596	CDD	DEADc	162	359	-	-
	Ahy1g0524	596	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	151	179	IPR014014	GO:0003724
	Ahy1g0524	596	CDD	SF2_C_DEAD	370	508	-	-
	Ahy1g0524	596	Gene3D	-	364	558	IPR027417	-
	Ahy1g0524	596	SMART	helicmild6	418	499	IPR001650	-
	Ahy1g0524	596	Pfam	Helicase conserved C-terminal domain	382	499	IPR001650	-
	Ahy1g0524	596	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	88	561	-	-
	Ahy1g0524	596	SMART	ultradead3	170	373	IPR014001	-
	Ahy1g0524	596	Coils	Coil	237	257	-	-
	Ahy1g0524	596	MobiDBLite	consensus disorder prediction	1	96	-	-
	Ahy1g0524	596	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	223	519	IPR027417	-
	Ahy1g0524	596	Gene3D	-	111	362	IPR027417	-
	Ahy1g0524	596	PANTHER	ATP-DEPENDENT RNA HELICASE DBP2-LIKE	88	561	-	-
	Ahy1g0524	596	Pfam	DEAD/DEAH box helicase	175	345	IPR011545	GO:0003676\|GO:0005524
	Ahy1g0524	596	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	182	358	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy1g0524	Ahy-Chr1	8194934	8202104	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy1g0524	151	521	Eukaryotic Initiation Factors Gene Family	AT1G72730	34.667	2.12e-67	223

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy1g0524	K12823		-	gmx:100787545	904.82