Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0508 ATGGCTAGAAAGAAAGTGGAGTTCAAATACATAGCAAATGACTCAAAGAGGAGGGCAACACAAAAGAAAAGGAAAAGTGGTATGATAAAAAAGGTTGATGAGATTAGCACTCTTTGCGGAGTTGATGCTTGTGCTATAATTTATACCCCTGATGAACCACGGCCAGAGGTATGGCCATCGCCATTAGGAGTGAACCGAGTGATCTCTAGATTTAACGAAATGCCTGTATTAGAACAAAGTAAGAAAATGATGTCTCAAGAGAGCTTCTTGAGACAAAAGATCCAGAAAGGCCAAGATCAACTAAAGAAACTAAAAAATGAGAATAGAAAGAAAGAGATGAACAATCTCATGTTTCAATCCTTAGGTGGCTACCAATCCCTTGACAACGCCACCATGATTGATCTCAATGATCTTGCATGGATCATTGATCAAAATATCAAGGAGGTCAACAAGCAAATTAGCAAGCTTCAAGGGCAAGAAGGGACTAGTAATAATAATAATAGAGTAGCAACCATCAATGATGAGCAAGCTCAAGTGGACAATCTCATCAACAGTGGTGTGTTTCCATTTGTGGATACTGCTAATAATTTCCAAAATGATTATGGCCCAACTCCATTTAATCCTTGA 627 0.3844 MARKKVEFKYIANDSKRRATQKKRKSGMIKKVDEISTLCGVDACAIIYTPDEPRPEVWPSPLGVNRVISRFNEMPVLEQSKKMMSQESFLRQKIQKGQDQLKKLKNENRKKEMNNLMFQSLGGYQSLDNATMIDLNDLAWIIDQNIKEVNKQISKLQGQEGTSNNNNRVATINDEQAQVDNLINSGVFPFVDTANNFQNDYGPTPFNP* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0508 208 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 169 - -
Ahy1g0508 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy1g0508 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy1g0508 208 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Ahy1g0508 208 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Ahy1g0508 208 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy1g0508 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy1g0508 208 Coils Coil 87 114 - -
Ahy1g0508 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Ahy1g0508 208 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Ahy1g0508 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0508 Ahy-Chr1 7785646 7786600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0508 1 175 Type I MADS-box Gene Family AT5G48670 46.857 5.93e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy1g0508 SRF-TF 2.90E-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0508 - - aip:107644294 358.992