Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0506 ATGGCTAGAAAGAAAGTGGAGCTCAAATACATAACAAATGACTCAAAGAGGAGGGCAACACTAAGGAAAAGGAAAAGTGGTCTAATAAAAAAGGTTGATGAAATTAGCACTCTTTGCGGGGTTGATGCTTGTGCTATAATCTATACCTCTGATGATCCACGGCCAGAGGTATGGCCGTCGCCATCAGAGGTGAACCGAGTGATCTCTAGATTTAAGGAGATGCCTGAATTAGAACAAAGCAAGAAAATGATGTCTCAAGAAAGCTTCTTGAGACAAAGGATTCAAAAAGGCCAAGATCAACTAAAAAAACTAAAAAATGAGAATAGAAAGAAAGAAATGAACAATCTCATGTTTCAATCCTTAGCTGGCTATCAATCCCTTGACAATGCCACCATGATTGATCTCAATGATCTTGCATGGATCATTGATCAAAATATCAAGGAGGTCGACAAGCAAATTAGCAAGCTTCAAGGACAAGAAGGGGCTAGTAGCAATAATAATGGAGTAGCAACCATCAACGAAGAGCAAGCTCAAGTGGACAATATCATCGATGGTGGTGTGTTTTCATTTGTGGATGCTGCTAATAATTTCCAAAATGATTATCGCCCAGCCCCATTCGATCCTTGA 627 0.3971 MARKKVELKYITNDSKRRATLRKRKSGLIKKVDEISTLCGVDACAIIYTSDDPRPEVWPSPSEVNRVISRFKEMPELEQSKKMMSQESFLRQRIQKGQDQLKKLKNENRKKEMNNLMFQSLAGYQSLDNATMIDLNDLAWIIDQNIKEVDKQISKLQGQEGASSNNNGVATINEEQAQVDNIIDGGVFSFVDAANNFQNDYRPAPFDP* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0506 208 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Ahy1g0506 208 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Ahy1g0506 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy1g0506 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy1g0506 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy1g0506 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 171 - -
Ahy1g0506 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy1g0506 208 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 171 - -
Ahy1g0506 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Ahy1g0506 208 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Ahy1g0506 208 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy1g0506 208 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0506 Ahy-Chr1 7774223 7774906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0506 1 199 Type I MADS-box Gene Family AT5G48670 44.762 1.00e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy1g0506 SRF-TF 1.60E-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0506 - - aip:107644294 357.836