Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0503 ATGCCACAGCAAGAGTTTTCAATGGCTCTAATGATTCTTCTCATTGTTCTCTCTATTGATATGATTATCATGCAAGGTGCCACAGCTGACTATGGTGGTTGGGAGAGTGCTCATGCCACTTTCTATGGTGGTGGTGATGCCTCTGGCACAATGGGAGGTGCTTGTGGATATGGGAATTTGTATAGCCAAGGTTATGGAACGAACACAGCAGCATTAAGCACTGCTTTGTTCAACAATGGACTAAGCTGTGGATCATGCTATGAGATGAAGTGTAATGATGACCCAAGATGGTGCAAGCCGGGTTCGATCATTGTCACGGCCACCAACTTCTGCCCGCCGAACCCGGCTCTGCCCAACAACAATGGTGGTTGGTGCAACCCTCCTTTGCAGCACTTTGACATGGCTGAGCCAGCATTCTTGCAAATTGCTGAATATAGGGCTGGAATTGTGCCTGTTGCTTTTAGAAGAGTTCCTTGCATGAAGAAGGGAGGAATAAGATTCACCATCAATGGCCACTCTTACTTCAACCTAGTTTTGGTAACAAACGTTGGAGGTGCTGGTGATGTTCATTCAGTTTCCATCAAAGGATCAAGAACTGGGTGGCAATCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCTTACCTCAATGGTCAAACCCTCTCATTCCAAGTCACCGCCAGTGACGGTAGAACTGTCACAAGCTTCAACGTGGCACCATCTAATTGGCAGTTTGGTCAAACCTTCCAAGGAAGCCAATTCTAG 771 0.4656 MPQQEFSMALMILLIVLSIDMIIMQGATADYGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCNDDPRWCKPGSIIVTATNFCPPNPALPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCMKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQSMSRNWGQNWQSNSYLNGQTLSFQVTASDGRTVTSFNVAPSNWQFGQTFQGSQF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0503 256 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Ahy1g0503 256 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Ahy1g0503 256 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Ahy1g0503 256 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Ahy1g0503 256 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Ahy1g0503 256 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Ahy1g0503 256 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Ahy1g0503 256 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Ahy1g0503 256 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Ahy1g0503 256 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Ahy1g0503 256 PANTHER EXPANSIN-A15 5 256 IPR002963 GO:0009664
Ahy1g0503 256 Gene3D - 21 160 IPR036908 -
Ahy1g0503 256 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Ahy1g0503 256 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Ahy1g0503 256 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Ahy1g0503 256 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Ahy1g0503 256 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Ahy1g0503 256 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Ahy1g0503 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Ahy1g0503 256 Pfam Lytic transglycolase 69 153 IPR009009 -
Ahy1g0503 256 Gene3D - 164 256 IPR036749 -
Ahy1g0503 256 PANTHER EXPANSIN 5 256 - -
Ahy1g0503 256 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Ahy1g0503 256 SUPERFAMILY Barwin-like endoglucanases 33 182 IPR036908 -
Ahy1g0503 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 164 IPR007112 -
Ahy1g0503 256 SMART dpbb_1 69 154 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0503 Ahy-Chr1 7713365 7716929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0503 6 256 Expansin Gene Family AT2G40610 77.778 7.65e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0503 - - gmx:100499976 465.307