Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0357 ATGGTGATGTCTTACTCAAGGAGATCAAGGTATTCTCCTTCTCCTTCCCCATCCCCATACAAGGGGTACAGCAGGTACAGCAGGTCCTTATCCAGGTCTCTTTCAATGTCAAGATCAAGATCGAGAAGCCGTTCAAGGAGCGTCTCAAGTGATGCAGAAAATCCTGGAAATAACTTGTATGTGACTGGATTATCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCAGCTGAAGGAAAGGTCATAGATGTACATCTTGTAGTTGATCCGTGGACAAGAGAATCACGTGGGTTTGGCTTTGTGACAATGGCAAATCTTGAGGATGCTGATCGGTGTGTGAAATATTTAAACCGCTCTGTACTTGAAGGGCGTGTAATCACAGTGGAGAAGGCCAGAAGGCGACGTGGCCGAACCCCAACGCCTGGAAGATATCTTGGGCTAAGGACTATTCGAGCACGCCGTCGCTCACGCTCACCAAGCTACTCTTCTCGGCGCTCTCCTAGCTATTCCCCCTACCGAAGAAGCTATAGTCGTTCGCCATATTCTCCAGACCGTAGTAGGAGTCCCTCTTATTCTCCTGACTATCGCCGTAGAAGGTCTTACTCTCCTGACTACCGGCGAAGGAGGTCTTACTCTCCATATTACTACAGTCGACGCAGGTCCCCATATTCTCCATATTATAGTCGTCGCAGGTCGTATTCGCGATATGATCGTTACGAGCGGCGGAGGTCATATTTGCGGTCTCAATCCCCATACAGCAGGTCACCTGTCAGTTATCGTGACAGATCATACTCTCCCTATGACTCAAGGTATGACTCGCCTGATGATCGCTATTACAGAAGGCACCACAACAGGTCAGTTTCTCCAAGTGTCTCCCCTCCCCCAAGGCGAAGGTCGAGGAGAAGCTACTCGCGGAGTGTCACTCCTGTTCGAATGAGGAGCTGCTCTCGAAGCATCTCTCCCCGACGCAGCAGGAGGAGCTACTCACGAAGTGTTTCTCCACCAAGGAAAAGTTCTGGGAGGAGCCATTCAAGAAGCTCTAAAAGGAGTGGTGGTTATTCCAAACTTAGTAGGAGCCCAAGTCCAAGTGTGAGTGCAAGTTCAAGATCATTTTCAAGGTCCAACACTCCTGGATCTGCTTCTCCTTCAACTTAG 1161 0.4935 MVMSYSRRSRYSPSPSPSPYKGYSRYSRSLSRSLSMSRSRSRSRSRSVSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMANLEDADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTIRARRRSRSPSYSSRRSPSYSPYRRSYSRSPYSPDRSRSPSYSPDYRRRRSYSPDYRRRRSYSPYYYSRRRSPYSPYYSRRRSYSRYDRYERRRSYLRSQSPYSRSPVSYRDRSYSPYDSRYDSPDDRYYRRHHNRSVSPSVSPPPRRRSRRSYSRSVTPVRMRSCSRSISPRRSRRSYSRSVSPPRKSSGRSHSRSSKRSGGYSKLSRSPSPSVSASSRSFSRSNTPGSASPST* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0357 386 MobiDBLite consensus disorder prediction 233 249 - -
Ahy1g0357 386 MobiDBLite consensus disorder prediction 327 386 - -
Ahy1g0357 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
Ahy1g0357 386 PANTHER TRANSFORMER-2-RELATED 12 227 - -
Ahy1g0357 386 PANTHER TRANSFORMER-2-RELATED 209 291 - -
Ahy1g0357 386 MobiDBLite consensus disorder prediction 250 264 - -
Ahy1g0357 386 MobiDBLite consensus disorder prediction 163 191 - -
Ahy1g0357 386 Gene3D - 9 141 IPR012677 -
Ahy1g0357 386 SMART rrm1_1 58 131 IPR000504 GO:0003723
Ahy1g0357 386 MobiDBLite consensus disorder prediction 134 386 - -
Ahy1g0357 386 CDD RRM_RBMX_like 56 133 - -
Ahy1g0357 386 MobiDBLite consensus disorder prediction 1 63 - -
Ahy1g0357 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 128 IPR000504 GO:0003723
Ahy1g0357 386 MobiDBLite consensus disorder prediction 267 285 - -
Ahy1g0357 386 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 12 227 - -
Ahy1g0357 386 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 209 291 - -
Ahy1g0357 386 SUPERFAMILY RNA-binding domain, RBD 45 162 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0357 Ahy-Chr1 5346710 5350041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0357 58 164 Eukaryotic Initiation Factors Gene Family AT2G36660 30.841 9.66e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0357 - - adu:107494646 216.468