Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0343 ATGGCTGCCGCAGATGTTGAGTTCTGGTGCTTCGTTGGTGGGCTTACATGGGCTACTGATAACGAAGCTCTAGAGAAAGCCTTCTCTGCCTACGGAGAAATCGTTGAATCAAAGGTACGTTCCTTCTTCATCTTTGATTCAAAGGCGAAGATCGATCAATCTGATGTGAATTCTCGTGGTTGTGTTCAAGTCATCAACGATCGCGAAATTGAAAGATCCAGAGGTTTCAGATTTGTGACCTTTGCTTCTGAGCAAGCCATGAGGAATGCGATTGATGACATGAACGGTTCCAGCCTTGACGTTCGTAACATCACTGTCAACGAGGCTCGTAACATCACCGTCAACGAGACTCAATTCCGTGAAGGTGGCGGAGGTGGCTTCAGAAGCGGAGGCGGCGGTGGATATGGTGGTGGCGGATTTAGCCACCAGGGCGGTGGTGGTGGATACAGAAGTGGGACCGTCATGAAGGTGGATACAACAGAAACGATGGTGACAGCGGTGGTTACGGAAAAAAAAATGTGA 522 0.4904 MAAADVEFWCFVGGLTWATDNEALEKAFSAYGEIVESKVRSFFIFDSKAKIDQSDVNSRGCVQVINDREIERSRGFRFVTFASEQAMRNAIDDMNGSSLDVRNITVNEARNITVNETQFREGGGGGFRSGGGGGYGGGGFSHQGGGGGYRSGTVMKVDTTETMVTAVVTEKKM* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0343 173 PANTHER GEO13361P1-RELATED 1 39 - -
Ahy1g0343 173 PANTHER GEO13361P1-RELATED 62 153 - -
Ahy1g0343 173 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 39 - -
Ahy1g0343 173 SMART rrm1_1 9 107 IPR000504 GO:0003723
Ahy1g0343 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 40 IPR000504 GO:0003723
Ahy1g0343 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 104 IPR000504 GO:0003723
Ahy1g0343 173 Gene3D - 3 152 IPR012677 -
Ahy1g0343 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 111 IPR000504 GO:0003723
Ahy1g0343 173 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 62 153 - -
Ahy1g0343 173 SUPERFAMILY RNA-binding domain, RBD 10 139 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0343 Ahy-Chr1 5072983 5073700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0343 11 119 Eukaryotic Initiation Factors Gene Family AT4G34110 28.070 6.33e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0343 - K13195 ahf:112791882 264.233