Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0339 ATGAGGACGATCAAAGAGATTTTCTTGAGACACTACTACTCTCTTTGGCTGTCACCATCACTATCACCACCGTCACACATGAATTCTAACAACGTAGAGAATCACGAGAACAGCGACGTCGCCATAGAACAAAGGAAGATCAACAAAGAGGAGGGGAGAGGCGAATCACCCTCAATTTCCTCGTTCATGTGCGAAATCTGCATTGACACTAAAATCGAAGCGGAAAATTTCTCTATAACCGGTTGCAGCCACTCATATTGTACGGATTGCGTGGTGAATTACGTTGGTTCTAAGCTTGACGACAACATGATTAATATCCAGTGTCCGGTACGCCGCTGTGGTGGTTTCTTGGAACTTGACGGTTGCCGCGAGGTTCTGCCAAAGATGATTTTCGATCGATGGGATAAGTTATTGTGTGAAGCTGCTGTTGTTGAGAACGAGAGCGAGAGATTCATATATTGTCCCTTCAAGGACTGCTCTGCCCTTATGATCGTCGACGATGATTCACCGACGGAATCAGAATGCCCTAGCTGTAATAGGCAGATCTGCGTCTCGTGCGAGACAGTTTGGCATCATGGGAGCACGTGCGAGGAATTTGGGAGGACAGATAATAAATATAGAGTAGTGATGGAGGTAGCGACCAAGAACTAG 651 0.4624 MRTIKEIFLRHYYSLWLSPSLSPPSHMNSNNVENHENSDVAIEQRKINKEEGRGESPSISSFMCEICIDTKIEAENFSITGCSHSYCTDCVVNYVGSKLDDNMINIQCPVRRCGGFLELDGCREVLPKMIFDRWDKLLCEAAVVENESERFIYCPFKDCSALMIVDDDSPTESECPSCNRQICVSCETVWHHGSTCEEFGRTDNKYRVVMEVATKN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0339 216 ProSiteProfiles Zinc finger RING-type profile. 64 112 IPR001841 -
Ahy1g0339 216 SUPERFAMILY RING/U-box 61 141 - -
Ahy1g0339 216 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 51 208 - -
Ahy1g0339 216 SMART ibrneu5 132 196 IPR002867 -
Ahy1g0339 216 ProSiteProfiles TRIAD supradomain profile. 60 216 IPR044066 -
Ahy1g0339 216 Pfam Zinc finger, C3HC4 type (RING finger) 64 109 IPR018957 GO:0046872
Ahy1g0339 216 Pfam IBR domain, a half RING-finger domain 133 196 IPR002867 -
Ahy1g0339 216 SUPERFAMILY RING/U-box 146 199 - -
Ahy1g0339 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 145 IPR013083 -
Ahy1g0339 216 ProSitePatterns Zinc finger RING-type signature. 82 91 IPR017907 -
Ahy1g0339 216 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 51 208 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0339 Ahy-Chr1 5022186 5022836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0339 58 196 ARIADNE family AT3G27710 24.648 2.58e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0339 K11975 - aip:107607785 189.119