LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy1g0201	ATGGCATCGTCATCAGACTCATGGATGAAGGAATATAATGAAGCAGTGAAACTCGCCGATGATATCAATGGCATGATTTCTGAGCGGAGTTCATTATCCACATCTGGACCAGAAGCTCAGCGTCATGCATCTGCTATAAGAAGGAAGATTACTATCTTAGGGATCAGACTTGATAGCTTGCAATCCCTTTTATCTAAAGTCCCTGGAAAATCTGAGAAGGAGATGAATCGCCGCAGGGAAACACTTACAACTTTGAGGTCAAAAGTTAACCAAATGGCTTCAACACTGAACATGTCAAACTTTGCAAATAGGGATAGTTTATTTGGTCCTGAAATAAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGATAACAGTGGACTCGTTGGACTTCAAAGGCAAATTATGAAAGAGCAAGATGAAGGCCTTGAAAAATTGGAGGAGACTGTTGTAAGTACAAAGCACATTGCATTAGCAGTGAATGAAGAGCTGAGTCTACACACTAGACTAATTGATGACTTGGACGAACATGTAGATGTTACAGATTCTCGTCTAAGGCGTGTCCAGAAGAACTTGGCAGTTTTAAACAAACGTACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTAGCAGTGGTTGGGATAGTGGTTTTGGTGGTTGTGATATGGTTGTTGGTCAAATATTTGTAG	690	0.4159	MASSSDSWMKEYNEAVKLADDINGMISERSSLSTSGPEAQRHASAIRRKITILGIRLDSLQSLLSKVPGKSEKEMNRRRETLTTLRSKVNQMASTLNMSNFANRDSLFGPEIKPDAMSRTVGLDNSGLVGLQRQIMKEQDEGLEKLEETVVSTKHIALAVNEELSLHTRLIDDLDEHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLAVVGIVVLVVVIWLLVKYL*	230

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy1g0201	229	Pfam	SNARE domain	170	221	IPR000727	-
	Ahy1g0201	229	Gene3D	-	135	197	-	-
	Ahy1g0201	229	SUPERFAMILY	SNARE fusion complex	124	194	-	-
	Ahy1g0201	229	CDD	SNARE_Qc	136	193	-	-
	Ahy1g0201	229	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	133	195	IPR000727	-
	Ahy1g0201	229	PANTHER	SYNTAXIN	1	223	IPR045242	-
	Ahy1g0201	229	SMART	tSNARE_6	128	195	IPR000727	-
	Ahy1g0201	229	PANTHER	TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED	1	223	-	-

Showing 1 to 8 of 8 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy1g0201	Ahy-Chr1	3000125	3004013	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy1g0201	1	229	SNARE and Associated Proteins	AT1G16240	72.845	8.85e-124	348

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy1g0201	K08503		-	gmx:100794038	372.089

Showing 1 to 1 of 1 entries