Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0189 ATGGGTAGCGAAGAAGAGAAGGTTCTAGAGAAACAACTTGAGCATCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGACGACGCTCTTCTCGCTGATCCATCCAACACCGAGCTTCTCGCGGTTCATGGGGAGCTTGTTCAGGCAATTAAGGATGCAGAGGAAGGACTTCTTCACCTAAAACGGGCCAGATTATTACAGGAAGCAGATTTGGTGTTGCACAGCACTAATCTTTTTGCTGAAGAAGAGAAAGTAGAGGCTCTTGATCCCACAGATGTTGAACCAGAGCCACTGGAGGAAAGTTGTTATTCTGTTGGATCTAAATGCAGATTCCGTCACAAAGATGGGAGATGGTACAATGGTCAAGTGGTACAGTTGGATAAGTCAGCAGCGAAGCTTTCATTCCTTACTCCTACATCTGAGAACATGCTGATCTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTGTCACATGGAGTTGATGTTCAATTGTCCTCACTGAAGAAATATGTCCCAACAATATGGAAGCCATCCTTGGCGGGGTCGAGTATATGGGCAGTCTCAAATGCTCATGGGGGCATTTGGAAGCGAGCTGAGCTTGAGTCTTGGGACGAGGATGTCGGAGCTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCAGCAAAGCTTGGGGCTGAAGAAATGGTATTGTCTGAGTATGCGGAAGTGAGTGACACAGAGAGTGATTCCAGCTTAGAACACTCCGACTCTAGTGACTATGAGGAAGAGGAATTGCAAGGTTTAGGATTTCTTGAGAGCACCAACCTACAAAGGGGTGTTCAGACTGAAACTGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGCGTAGCATCGAAAATGATGGCTAATATGGGTTACCGAGAAGGAATGGGTTTAGGCGTAACTGGTCAGGGAATGCTAGATCCCATAACAGTGAAAGTCCTACCGGCAAAGCAATCCTTAGATCATGCACTTGAGTCTCAAAAAGGAGAAGAGGACACAGAGAAACAAAGCAAGAAACGGAGCCGAGGTGGTAAAAGAAAGCGCGATAAGAAATTCATGGAAGCAATTCGAGCAGCAAAAGAAGAAGAATCGAACGTAGACGTCTTTACACTAATAAATAATCAACTTGCAGTGCACGGCCAAGCTTTAAATGGTGGATCAGGGAAAAAGCAGAGCAAAGATTCCGCAGAAGGTAAAAAGGTGGATAGGCGAACATTGATTGCGTATGAGGATGAGGTGAAGGATTTGAAGTTGAGGGTTGAGAAGCTGGAAGCAATAGTGAATATCAACAGAAAAGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAATTAGCAGAGACACGTAAGGCATTAGCCGAAGCTGAAGCCACGCATGCCTCTGCATCGAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1479 0.4496 MGSEEEKVLEKQLEHQLQEQRDSLSAIDDALLADPSNTELLAVHGELVQAIKDAEEGLLHLKRARLLQEADLVLHSTNLFAEEEKVEALDPTDVEPEPLEESCYSVGSKCRFRHKDGRWYNGQVVQLDKSAAKLSFLTPTSENMLICKFFLQQRCRFGTNCRLSHGVDVQLSSLKKYVPTIWKPSLAGSSIWAVSNAHGGIWKRAELESWDEDVGAGQVVFRDDGSSAKLGAEEMVLSEYAEVSDTESDSSLEHSDSSDYEEEELQGLGFLESTNLQRGVQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVTGQGMLDPITVKVLPAKQSLDHALESQKGEEDTEKQSKKRSRGGKRKRDKKFMEAIRAAKEEESNVDVFTLINNQLAVHGQALNGGSGKKQSKDSAEGKKVDRRTLIAYEDEVKDLKLRVEKLEAIVNINRKEKAVYEAAMRKLAETRKALAEAEATHASASNAVVSKEKEKRWLKF* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0189 492 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Ahy1g0189 492 MobiDBLite consensus disorder prediction 338 366 - -
Ahy1g0189 492 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Ahy1g0189 492 Gene3D - 119 178 - -
Ahy1g0189 492 Coils Coil 421 448 - -
Ahy1g0189 492 MobiDBLite consensus disorder prediction 338 354 - -
Ahy1g0189 492 Coils Coil 452 486 - -
Ahy1g0189 492 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Ahy1g0189 492 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 492 - -
Ahy1g0189 492 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Ahy1g0189 492 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Ahy1g0189 492 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Ahy1g0189 492 SMART G-patch_5 292 338 IPR000467 GO:0003676
Ahy1g0189 492 MobiDBLite consensus disorder prediction 471 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0189 Ahy-Chr1 2852116 2857492 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy1g0189 G-patch 2.20E-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0189 - - gmx:100796284 728.398