Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0124 ATGGAAGAAGCAATGGCGGCAAGGTATTGGTGTCATATGTGCTCACAAATGGTGAATCCCATAACTGAAGGCGAGATCAAATGCCCATTATGCCAGAGTGGGTTTGTTGAAGAAATGAGTAACACCACTACTGTTAGCAATATGCTGGAAGCTCCTGATTTCGGCCCTGACCGGACACTTTCCCTTTGGGCTCCCATATTGTTAGGCATGTTGAGCAATCCGCATAATCGTCGAAGGCCTAGGCGATTAGAGCTCGATGATGATGATAACGACAACCATGATGATCATAATGGTAGTGGTAATAATGGTAATGCTACAAATAATGGTAATGGTAACAGCAACGATAATGGTAATGCTTTTGCGCGCCTTGGTGGAGAAAATGAATATGATCGTGAGCTCGAGTCTATCCTTCGGAGAAGAAGGAGAAGCTCAGCTACCATACTTCAATTGCTCCAAGGCATTAGAGCTGGCCTGGCATCTGAACTGAATGAGAACACTGATGGTGATGGCAATGGTAGGGAAAGAGAAAGAGAAAGAGAAAGAGACAGAGAGCGTGTAATCTTGATCAATCCTTTTAATCAAACTATTATTGTTCAAGGTTCCTATGACTGGAACCGCGGTCAAGGTGATAATCATACACCCATTGGTTCTCTGGGTGACTATTTCATTGGTCCTGGTTTGGATTTACTGTTGCAGCATTTGGCCGAGAATGATCCCAATAGGCACGGAACTCCACCTGCGCAGAAGGAGGCCATCGAAGCATTGCCTACCGTGACAATTGACGAGAATATGCAATGTTCTATTTGCCTTGATGATCTTGAAGTTGGTTCTGAAGCCAAACAGATGCCCTGTAAACATATGTTTCATAGTGGATGTATCCTTCCTTGGTTGGAGCTCCATAGTTCTTGTCCGGTTTGCAGGTATCAGTTGCCCGCTGATGAATCTAAGCGCGAACCGGATGCATCCTTGAGGACTAGCAGTAATCAAAGGGAGGATGAAAATACTGGACATGACAATGTTGATGGGGATATTGAAGGAAGAAATGCAAGTGGGAGTAGAAGATTCTCCTTTCCATGGCCTTTCAATGGTTTATTTTCTTCACCAAACCCTTCAGCAGCATCTTCTTCTAGCAACAATCCAAATGGAGATAATGTTACTCGATCAGAAGAGAACTGA 1176 0.4405 MEEAMAARYWCHMCSQMVNPITEGEIKCPLCQSGFVEEMSNTTTVSNMLEAPDFGPDRTLSLWAPILLGMLSNPHNRRRPRRLELDDDDNDNHDDHNGSGNNGNATNNGNGNSNDNGNAFARLGGENEYDRELESILRRRRRSSATILQLLQGIRAGLASELNENTDGDGNGRERERERERDRERVILINPFNQTIIVQGSYDWNRGQGDNHTPIGSLGDYFIGPGLDLLLQHLAENDPNRHGTPPAQKEAIEALPTVTIDENMQCSICLDDLEVGSEAKQMPCKHMFHSGCILPWLELHSSCPVCRYQLPADESKREPDASLRTSSNQREDENTGHDNVDGDIEGRNASGSRRFSFPWPFNGLFSSPNPSAASSSSNNPNGDNVTRSEEN* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0124 391 MobiDBLite consensus disorder prediction 314 348 - -
Ahy1g0124 391 CDD RING-H2_RNF126_like 265 307 - -
Ahy1g0124 391 SUPERFAMILY RING/U-box 256 314 - -
Ahy1g0124 391 MobiDBLite consensus disorder prediction 77 96 - -
Ahy1g0124 391 MobiDBLite consensus disorder prediction 366 385 - -
Ahy1g0124 391 ProSiteProfiles Zinc finger RING-type profile. 266 307 IPR001841 -
Ahy1g0124 391 MobiDBLite consensus disorder prediction 161 181 - -
Ahy1g0124 391 MobiDBLite consensus disorder prediction 74 122 - -
Ahy1g0124 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 364 - -
Ahy1g0124 391 MobiDBLite consensus disorder prediction 167 181 - -
Ahy1g0124 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 313 IPR013083 -
Ahy1g0124 391 MobiDBLite consensus disorder prediction 97 120 - -
Ahy1g0124 391 Pfam Ring finger domain 265 307 IPR001841 -
Ahy1g0124 391 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Ahy1g0124 391 SMART ring_2 266 306 IPR001841 -
Ahy1g0124 391 MobiDBLite consensus disorder prediction 366 391 - -
Ahy1g0124 391 MobiDBLite consensus disorder prediction 314 351 - -
Ahy1g0124 391 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0124 Ahy-Chr1 1843059 1845447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0124 183 313 C3H Transcription Factor Family AT1G26800 42.105 2.64e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0124 K11982 - qsu:112015357 438.343