Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0093 ATGGCAGAGATGGGTGAGGAGGTGAAAGCAATTGTTCCCGAGTCTGTGCTTAAGAAGCAGAAGAGGGAGGGGGAATGGGCCTTGAAGAAAAAGGAGGAGCTTAATGCTGCAAAGAAGAAGAGAGCTGAGAGCCGCAAGCTCATTTACAGCAGGGCAAAGCAATATGCAAAGGAATACCAGGAGCAGGAAAAGGAGCTGATCCAATTGAAGCGGGAAGCAAAGCTGAAAGGTGGATTCTATGTTGATCCAGAGGCTAAACTCCTGTTTATCATCCGCATCCGTGGTATCAATGCCATGGACCCCAAGTCAAGAAAGATCTTGCAGTTGTTGAGGTTGAGACAGATCTTCAATGGTGTGTTCCTCAAGGTTAATAAGGCCACAATGAACATGCTTCACAGGGTTGAACCATATGTGACCTATGGATACCCAAATTTGAAGAGTGTAAAAGAGCTTATTTACAAGAGGGGCTTTGGTAAGTTGAACAAGCAGAGAATTGCCCTAACCGACAACTCGATCATTGAGAAGGCACTGGGCGAACATGGAATCATCTGCATCGAAGATCTTATCCATGAGATCATAACAGTTGGACCCCATTTCAAGGAAGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCATTGGGTGGCTTGAAGAAGAGGAACCACTATGTTGAAGGAGGAGATGCCGGAAACAGGGAGAACTACATCAATGAGCTTATCAGGAGAATGAATTAG 738 0.4539 MAEMGEEVKAIVPESVLKKQKREGEWALKKKEELNAAKKKRAESRKLIYSRAKQYAKEYQEQEKELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNSIIEKALGEHGIICIEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKRNHYVEGGDAGNRENYINELIRRMN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0093 245 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Ahy1g0093 245 Gene3D - 87 191 IPR036919 -
Ahy1g0093 245 Gene3D - 192 245 IPR036919 -
Ahy1g0093 245 SUPERFAMILY Ribosomal protein L30p/L7e 87 245 IPR036919 -
Ahy1g0093 245 TIGRFAM uL30_euk: 60S ribosomal protein uL30 13 245 IPR005998 GO:0000463|GO:0003735|GO:0022625
Ahy1g0093 245 CDD Ribosomal_L7_archeal_euk 87 245 IPR035808 -
Ahy1g0093 245 Coils Coil 52 76 - -
Ahy1g0093 245 PANTHER 60S RIBOSOMAL PROTEIN L7 1 245 IPR039699 -
Ahy1g0093 245 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 1 245 - -
Ahy1g0093 245 Pfam Ribosomal L30 N-terminal domain 12 83 IPR012988 -
Ahy1g0093 245 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0093 Ahy-Chr1 1328163 1332018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0093 7 245 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.417 7.45e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0093 K02937 - gmx:100813342 418.313