Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0075 ATGATGAATCATTGTTGCAGTAACAGCAACTCTCAGGATCACGTGATGGGCACGTGTAAATGCGGCATGCTCCCCACGCCCTATGGAGATGACTATTATTACGGTGACCCAAACAGGTACTCCTTTACACCTTCTTCGTCGTCTTTGTCTTGGTCGTCGGTGGACTGTACCCTCTCCCTGGGGACACCGTCCACGCGATTCTCCGAACACGAAGACAGGCGAACACGTCATCATCATGAACGTCGCTCCAAACAGAATCCTCATCATTCTGAGGCTAAAGCCAGCAAGGAATCCGACGGTGATGCTTTCTTTTCTCGCCGCTGTGCCAACTGTGATACCACTTCCACACCTCTATGGAGGAACGGTCCTCGGGGACCCAAGACACTATGCAATGCATGCGGGATTAGATACAAGAAAGAAGAGAGAAGAGCCAGCGCTACTGCAGCCGCCACCACAACCACCGTTACTAACAGCGGCGGCGAAATGGAGCCGGTTACGGCTCACATGTACGGCCACAACAATAACAATTCGTGGTACTATACAAACTCTCAAGGCAATAATAATGGCGAGTTACGTTTCATGGATTATGATGCCAATGATGACATGGACCCATTCCCTTCTTGGAGACTCAACAATGCAGACAGAACAAATCTTGTTCACGACTTTACAAGATGA 675 0.4948 MMNHCCSNSNSQDHVMGTCKCGMLPTPYGDDYYYGDPNRYSFTPSSSSLSWSSVDCTLSLGTPSTRFSEHEDRRTRHHHERRSKQNPHHSEAKASKESDGDAFFSRRCANCDTTSTPLWRNGPRGPKTLCNACGIRYKKEERRASATAAATTTTVTNSGGEMEPVTAHMYGHNNNNSWYYTNSQGNNNGELRFMDYDANDDMDPFPSWRLNNADRTNLVHDFTR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0075 224 CDD ZnF_GATA 107 139 IPR000679 GO:0006355|GO:0043565
Ahy1g0075 224 SMART GATA_3 102 154 IPR000679 GO:0006355|GO:0043565
Ahy1g0075 224 MobiDBLite consensus disorder prediction 63 99 - -
Ahy1g0075 224 Pfam GATA zinc finger 108 142 IPR000679 GO:0006355|GO:0043565
Ahy1g0075 224 MobiDBLite consensus disorder prediction 85 99 - -
Ahy1g0075 224 ProSiteProfiles GATA-type zinc finger domain profile. 105 138 IPR000679 GO:0006355|GO:0043565
Ahy1g0075 224 ProSitePatterns GATA-type zinc finger domain. 108 133 IPR000679 GO:0006355|GO:0043565
Ahy1g0075 224 PANTHER GATA TRANSCRIPTION FACTOR 18 17 221 IPR044272 GO:0003700|GO:0009908
Ahy1g0075 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 146 - -
Ahy1g0075 224 Gene3D - 104 169 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0075 Ahy-Chr1 1145991 1148269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0075 50 224 C2C2-Gata Transcription Factor Family AT3G50870 41.667 4.28e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy1g0075 GATA 9.00E-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0075 - - gmx:100799154 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0819 11 15059039 15060941 Ahy1g0075 1 1145991 1148269 hybridization
Ahy5g0781 5 10491824 10493414 Ahy1g0075 1 1145991 1148269 PCT
Ahy1g0075 1 1145991 1148269 Ahy5g0356 5 4161435 4169931 PCT