Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy1g0011 ATGTCATCGACGCCTACACCATGCGCGGCATGCAAGTTCCTTCGTCGGAAGTGCACACCGGAGTGCATTTTCGCACCGTACTTCCCAGCGAACAACCCAGAGCGCTTCGAATGCGTCCACCGCGTCTTCGGCGCCAGCAACGTCGGCAAGATCCTCAACGAGCTACCTCCATCCAAGCGCGAGGAGGCGGTGAAGTCCCTTGCGTTCCAGGCGAAGGCACGCCTCCGCGACCCGGTCTATGGTTGCACCCTCCAAATCTCCTACCTCCAGAAGCTCCTCCGCCAGAGACATGCCGACCTCGAAAACGCCAAGAGAGAACTTAACGCCTACATGAACCCACAAGCCAATCAAGGTCCATTCAACCCTCAGGAAAAGCCGCTGTCTTCACCTCCCGTCCATTTAGGCCCTCCCTGCGGCCCTAATGTTGTACAGTATTCAGCCCATTTAGGCCCATCCTACGGTCCAGATGTTGTACAGTCTTCAGTCCATTTGGGCCTACTGGACGGCCCAGATGATGAACCGTTTTTTAAGCCGGCTATGCAGCATAATGGGTCATTGGGTGGTGATTCTGCTGACTTGCTGGCGGACCCAGGGCAGCAAGAGTTGTTGGAGGCCCAACAACTTGCTGCTGCTGTGGCAATCCGAGAACAGCAGCAAGCTATGATGAGGAGGAATTTTGTCCAGCAACAGCAACGGGAGTATCTAAGACACAATGCTGCTGCTGGGATTGAACCTGTTGCGGCTGGGGCGCCCTACGGTGGTGACGTCAGTGGAAGTGGAGTGTTTGGTCACATGGGTGCACCTTCAGGCGGTCAAGGTGGTGAGATGGCTCCTTGTATGGGTTTCGGGACATTTGACAGTGGTGCAAGTTATCATCCACAGTTGCAACAACCATCACAGCATGGAGTAGGAGAAAATTACTTTGGTCTTGCAACTCAACATCACTACCCTCTTGGGGGCCAGCTGCTACTCCCATCAGAGCAGCAAGCACTACCATTGACCCAACAACAACAAAAACAGCTAGAGCTACAAGTATTTCAACAACAACAAGAACTACAACTATTACAACAACAACAACTAGAACTACAAGTATTACAACAACAACAACAACAGGAGCAGCAGCAACAACTACAACAACAACATCTGTTAGAGAGTGAAGACAGTAAGAGTGTCGGCCCTTCTTGA 1185 0.5224 MSSTPTPCAACKFLRRKCTPECIFAPYFPANNPERFECVHRVFGASNVGKILNELPPSKREEAVKSLAFQAKARLRDPVYGCTLQISYLQKLLRQRHADLENAKRELNAYMNPQANQGPFNPQEKPLSSPPVHLGPPCGPNVVQYSAHLGPSYGPDVVQSSVHLGLLDGPDDEPFFKPAMQHNGSLGGDSADLLADPGQQELLEAQQLAAAVAIREQQQAMMRRNFVQQQQREYLRHNAAAGIEPVAAGAPYGGDVSGSGVFGHMGAPSGGQGGEMAPCMGFGTFDSGASYHPQLQQPSQHGVGENYFGLATQHHYPLGGQLLLPSEQQALPLTQQQQKQLELQVFQQQQELQLLQQQQLELQVLQQQQQQEQQQQLQQQHLLESEDSKSVGPS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy1g0011 394 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Ahy1g0011 394 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 4 231 - -
Ahy1g0011 394 MobiDBLite consensus disorder prediction 375 394 - -
Ahy1g0011 394 Coils Coil 338 377 - -
Ahy1g0011 394 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 231 - -
Ahy1g0011 394 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy1g0011 Ahy-Chr1 172767 174084 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy1g0011 1 115 AS2 family AT5G66870 64.348 2.20e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy1g0011 LOB 5.30E-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy1g0011 - - ahf:112710769 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0890 11 17311245 17312222 Ahy1g0011 1 172767 174084 hybridization
Ahy5g0676 5 8916062 8918618 Ahy1g0011 1 172767 174084 PCT