Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3593 ATGGAACAGAAGCACGTGCTGTTGTCTGCATTGAGTGTTGGGGTTGGGTTGGGTGTTGGGTTGGGATTGAGCTCAGGGCAGAAATGGGTTGGAGGAGGGAGCCATGACGTAGACGAGCTTCCTGGGGAACAGATTGTTCAGGAGCTCAAGAAGCAGATCATTGATGGAAAGAACAGCAAGGTCACTTTTGACGAGTTCCCTTATTACTTGAGTGAGAAAACTCGAGTTTTGTTGACAAGTGCTGGATATGTTCATTTAAAACAACAACACTTCTCCAAACACATGAGGAACCTTTCACCAGTAAGCAGAGCTATTTTGCTCTCCGGACCTGCAGAAATTTACCAGCAAATGCTTGTCAAAGCTTTAGCACACTTTTTTGAATCCAAGTTGCTGCTGCTAGATATTACTGAATTCTCTTTGAAGATGCAGAGCAAATATGGATGCTCTAGAAGAGAATCATGTTTGAAAAGGTCCCTATCCGAGGTAACTATGGAGCGAATGTCTGGTTTATTTAGTAACTTTTCACTCCTCCCGTCAGCAAGCGAAAGTAGAGGTAGTCATCGTCGACATCGTAGTAGCGGACAAGAAAATAGACAAAGTAGCGGTGGAAATGAAAATTTTAACAATGCTTCAAAGCTCCGAAGGACTTCCTCTTCTTCATCTGATATAAGTACCTCCCTGTTTGGTCCAAATGATTCAGGTTCTTTGCAGCGAACAAACCATGTTTCTTTTGATGAAAAGCTATTTGTGAAGTCACTTTACAAGGTCTTGGTTTCTGTCTCAGAAACTAGTGCCATTGTTCTATATATCAGGGATGTTGATAAGCTATTCCTTCGATTGCCGACAATGTATAGTATGTTGCAAAGACTAATGAAGAAACTGACAGGGTCAGTGTTGATACTTGGTTCCCAAGTGGTGGATTCAGATTACTGTAAAGAAGTTGATGAACGGCTAGGTATATTATTTCCTTACAACATTGAGATCAAACCCCCTGAAGATGAGACTCAATCTGGCAACTGGAAAGCCCAACTGGAAGAGGACATGAAAGTATTTCAGTTTCAAGATAACAGAAACCACATTGCTGAAGTTCTATCAACAAGTGGCATCGATTGTGATGACTTGCATTCAATCTGCCACTCTGACACTATGCTACTCAGTAACTACATTGAGGAAGTCGTGGCATCTGCAGTTTCCTATCATTTGATGAACACTAAGGATCCACAATACCGGAACGGAAAGCTAGTTGTATCGGCTAAGAGTCTGTGTCAGGCGCTGAATCTGTTCCAGGAAGGCAAAGTCAGTGGAAAGGATAATACAAAAACTAATGAGACCAAGGATGATGCGGGAGAAGATGGTATTGGTGCAAAGAATGATACAAGGAGCGATGCCCAAGCACCTGAAAAAAGCGAGGGAGAGAAATCTAACCCAGTAACAAAGAAGGATGGAGAGAATAGCACTCCTGCAAAAGCAGCTGAACCTCCTCCGGACAATGAGTTCGAGAAGCGAATAAGACCAGAGGTGATACCTGCAAATGAGATAGGGGTTACATTTGGAGACATTGGTGCATTGGATGAGATTAAAGAATCACTTCAAGAGGCGGTGATGCTTCCCCTTAGAAGACCAGACCTCTTCAAAGGTGGCCTTCTAAAGCCTTGTAGAGGTATATTGCTTTTCGGGCCTCCTGGTACAGGAAAAACAATGCTGGCAAAGGCGATTGCAAATGAAGCAGGTGCAAGTTTCATTAATGTTTCAATGTCCACCATAACTTCAAAGTGGTTTGGGGAAGATGAAAAGAATGTTCGAGCTTTGTTCACGCTTGCAGCAAAGGTTGCTCCAACTATTATTTTTGTTGACGAGGTTGATAGCATGCTTGGGCAGCGTAACAGAGCCGGAGAGCACGAGGCAATGAGGAAGATTAAAAATGAATTCATGACTCATTGGGACGGACTATTGACAAAGCCTAGTGAGCAGATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGATCTCGATGAGGCTATTATAAGACGGTTTGAGCGCAGGATTATGGTTGGTCTTCCATCTGCTGAAAACCGGGAAGGCATCTTGAAAACTCTTCTAAGTAAGGAAAAACATGAAAATATAGACTTCAAAGAGGTTGCAGATATGACGGAAGGATATAGCGGGAGTGATCTTAAGAATTTGTGCATGACAGCGGCTTATCGGCCTGTTAGGGAGCTACTCAAGCAGGAGACCATGAAGGAAGTGGAACGGAAGAAGAAAGCGGCACAAGGCCAAATCTCAGAAGATATGTCCAATGCTACAGAGGATAAAAAAGGTCAATCAGTTACCCTGAGGCCTTTGACCATGGAAGACATTAGAAAGGCAAAGAATCAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATAATGAGCGAGCTGAAGCAGTGGAATGATTTGTATGGAGAAGGAGGTTCAAGGAAGAAAGAGCAACTCACTTATTTCCTATAG 2490 0.4317 MEQKHVLLSALSVGVGLGVGLGLSSGQKWVGGGSHDVDELPGEQIVQELKKQIIDGKNSKVTFDEFPYYLSEKTRVLLTSAGYVHLKQQHFSKHMRNLSPVSRAILLSGPAEIYQQMLVKALAHFFESKLLLLDITEFSLKMQSKYGCSRRESCLKRSLSEVTMERMSGLFSNFSLLPSASESRGSHRRHRSSGQENRQSSGGNENFNNASKLRRTSSSSSDISTSLFGPNDSGSLQRTNHVSFDEKLFVKSLYKVLVSVSETSAIVLYIRDVDKLFLRLPTMYSMLQRLMKKLTGSVLILGSQVVDSDYCKEVDERLGILFPYNIEIKPPEDETQSGNWKAQLEEDMKVFQFQDNRNHIAEVLSTSGIDCDDLHSICHSDTMLLSNYIEEVVASAVSYHLMNTKDPQYRNGKLVVSAKSLCQALNLFQEGKVSGKDNTKTNETKDDAGEDGIGAKNDTRSDAQAPEKSEGEKSNPVTKKDGENSTPAKAAEPPPDNEFEKRIRPEVIPANEIGVTFGDIGALDEIKESLQEAVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRNRAGEHEAMRKIKNEFMTHWDGLLTKPSEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREGILKTLLSKEKHENIDFKEVADMTEGYSGSDLKNLCMTAAYRPVRELLKQETMKEVERKKKAAQGQISEDMSNATEDKKGQSVTLRPLTMEDIRKAKNQVAASFAAEGSIMSELKQWNDLYGEGGSRKKEQLTYFL* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3593 829 Gene3D - 687 769 - -
Ahy19g3593 829 MobiDBLite consensus disorder prediction 748 777 - -
Ahy19g3593 829 MobiDBLite consensus disorder prediction 759 775 - -
Ahy19g3593 829 MobiDBLite consensus disorder prediction 433 503 - -
Ahy19g3593 829 CDD AAA 553 686 - -
Ahy19g3593 829 ProSitePatterns AAA-protein family signature. 658 677 IPR003960 GO:0005524|GO:0016887
Ahy19g3593 829 MobiDBLite consensus disorder prediction 196 225 - -
Ahy19g3593 829 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 829 - -
Ahy19g3593 829 Pfam AAA+ lid domain 707 750 IPR041569 -
Ahy19g3593 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 758 IPR027417 -
Ahy19g3593 829 Gene3D - 514 686 IPR027417 -
Ahy19g3593 829 Pfam ATPase family associated with various cellular activities (AAA) 555 685 IPR003959 GO:0005524|GO:0016887
Ahy19g3593 829 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 829 - -
Ahy19g3593 829 MobiDBLite consensus disorder prediction 436 479 - -
Ahy19g3593 829 MobiDBLite consensus disorder prediction 181 225 - -
Ahy19g3593 829 Coils Coil 746 766 - -
Ahy19g3593 829 SMART AAA_5 551 688 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3593 Ahy-Chr19 158527637 158532589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3593 515 760 Calmodulin-binding Proteins AT3G56690 40.000 2.97e-44 171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3593 19 158527637 158532589 Ahy19g3593 19 158527637 158532589 ECH
Ahy19g3593 19 158527637 158532589 Ahy9g2022 9 108560854 108565743 hybridization
Ahy15g3613 15 158869586 158875273 Ahy19g3593 19 158527637 158532589 PCT
Ahy5g3205 5 113926458 113932062 Ahy19g3593 19 158527637 158532589 PCT