Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3571 ATGCCAGTTGCTAAACTCACGGCCTCTGGCTCTCCTGATGTCATGAAAACAGAAGACAGAAATGATTCTATAGATACCATCATCAGACAAGCAATTGGAAAGGAACCTTTCCTTTCTTTTCCTAGGGCTGGTGACAGCCCTGTACAATGGATTCAATTACTCCATGCTTTAGACCAGCAAGAACTTCCAGGGTGGCCTTTGCTTTCTCCTGTGAAAGTTCAGTTGCAGAAGTGTGACAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACCATAGAAGACATATGCGTGTACACCATCGATTGAAGAAGCTTGATAAGGATTCTAAGAAAAACCGAGATCTTCTAGGAGCTTATTGGGATAAGCTCTCTATAGAAGAGGCAAAAGAAGTTGTGTCATTCAAGAATGTAATGTTGGAGGAAGTTCCAGGGTCTTCAATTTTAAATGCTTTGGCAAGTCTTACTCAAAAACAAGGATTGTCTTCTCTTCCACAGTATTATCTTAGGGCTGGTTCTGCCCTTCTGGATATTGTCGAATCGAGGCCTTCAAGCTTTCCTATATCTTCCCAAGAGTTGTTCAGTATACTTGATGATTCCAGTGAAAAAACATTTTTGTGTGGGACAGCAGTGTCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACATAGTTTCTTGCACTAGTTTCTTGGTAGAGCAGAAATTGGTGAAGGCATGGCTTGCAGACAAAGAAGCTGAAGCATTGAAGTGTCAGAAGCAGCTAGTTGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAAAAGCTTAGACAAAAAGAACAGAAGGGGAGGGAACTGCTCGAAGATGACATTGAAATTAAACGGAACATCAATAGCACAGGAGAGGCTGTACTATCTGCAGAAACATCTTTGGATACGTGTGTCTTTGAAGCACATAATTCTGATACATTTGCAGATCATGCTTCTTCACCACATGCATCTGCCTGTCACTTTCCTGACATTTATGAAGGTGCTGAAAGGGACTCAGGGTATGAATGTGACACTGATCAAAATATTGAGCGACAAACATCCCACAGACATAATCGTCGACGCATGATGGTTGCAAGACAGCAAGGACTGCCAAAATCACAGTGGGCTGTATCCAACTGTTTACATGCGAGCCCATATTCTCAATTATCAAAGCATGGAGTCATTCAGAGATATGGGACAAACCGGGATCAAAGAGTGACTTCTATTACTAATGGGATGAAAGTATGGAGTCGAAAGCCTAAACCGGATATTGATGGGATGGTTTCAAAAGCCAGACTGCAAAAAGAACCAGACAAGGTTAAGAATCATGAAGTATTGATAGGATCTATATCTGTAACTCTAAGCAATTGCAGCCAATCAGTGGGTAGCCTTGTGGCATCTCATGGTGATGATATTGTGGAGAATCCGACAAAGCAGTGTACTGTACAGGAGAAGCCAGTGAAACCTGATTCCTCCCAGAGTAGCAACAACCCATTAACAGTGAAGTTTTGGCGGCCAATTGACAAACATGGAACCAAAGACCCATTTCCACTTCAAAATGGTAGGGCTGGAGCTGAAGCTGATACTTATGAAAAACAGGATCAAACTTTGTCAGGTCAAAGTAGTTTAAGGGTGTATAGTATAGATCATAGTGATATTGGTTTCGGGAACAAGTTTCCCGATTTTGGTGCTAAAGCATATCCAAGAAGCCTTTTCTCCAGACATGCTGCCAAAGTCTTTCTTGCACAAAGATGGAAAGAAGCTATTTCATCAAACCATGTGAAATTGGTTGTTTCGCCTGATTCTGAACCGCTTGAATGCCAAGAGGTACAAGATCGTGAACTGACAGCATCTGAATTTTCTAATGCCGATAGATATGGCACTGTTGCAAATGCAGAGAATCAATTGCATGCAACCTCCGAAGTTACTAAATCCAAAACCAAAATGAAGCCTAAAAAGGGAATCAAGATAAAGTATATTCCCAAACAAAAAGCAGCTACCTAG 2058 0.4155 MPVAKLTASGSPDVMKTEDRNDSIDTIIRQAIGKEPFLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPVKVQLQKCDKCSREFCSPINHRRHMRVHHRLKKLDKDSKKNRDLLGAYWDKLSIEEAKEVVSFKNVMLEEVPGSSILNALASLTQKQGLSSLPQYYLRAGSALLDIVESRPSSFPISSQELFSILDDSSEKTFLCGTAVSMQRYVFDGEAGKIGLEPKNIVSCTSFLVEQKLVKAWLADKEAEALKCQKQLVEEEEAAQKRQAEILERKRQKKLRQKEQKGRELLEDDIEIKRNINSTGEAVLSAETSLDTCVFEAHNSDTFADHASSPHASACHFPDIYEGAERDSGYECDTDQNIERQTSHRHNRRRMMVARQQGLPKSQWAVSNCLHASPYSQLSKHGVIQRYGTNRDQRVTSITNGMKVWSRKPKPDIDGMVSKARLQKEPDKVKNHEVLIGSISVTLSNCSQSVGSLVASHGDDIVENPTKQCTVQEKPVKPDSSQSSNNPLTVKFWRPIDKHGTKDPFPLQNGRAGAEADTYEKQDQTLSGQSSLRVYSIDHSDIGFGNKFPDFGAKAYPRSLFSRHAAKVFLAQRWKEAISSNHVKLVVSPDSEPLECQEVQDRELTASEFSNADRYGTVANAENQLHATSEVTKSKTKMKPKKGIKIKYIPKQKAAT* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3571 685 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Ahy19g3571 685 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Ahy19g3571 685 Coils Coil 247 293 - -
Ahy19g3571 685 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 683 - -
Ahy19g3571 685 MobiDBLite consensus disorder prediction 528 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3571 Ahy-Chr19 158376254 158381857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3571 18 682 C2H2 Transcription Factor Family AT4G25610 42.815 1.05e-148 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy19g3571 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3571 19 158376254 158381857 Ahy19g3571 19 158376254 158381857 ECH
Ahy19g3571 19 158376254 158381857 Ahy9g2055 9 109100709 109106324 hybridization
Ahy15g3554 15 158325092 158330577 Ahy19g3571 19 158376254 158381857 PCT
Ahy5g3145 5 113275772 113281369 Ahy19g3571 19 158376254 158381857 PCT
Ahy19g3571 19 158376254 158381857 Ahy15g3554 15 158325092 158330577 PCT
Ahy19g3571 19 158376254 158381857 Ahy5g3145 5 113275772 113281369 PCT