Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3567 ATGTCAGAATCTGAAGAAGATAAAACAGACTTTGCTTCTCCAAAGTCAAAGGAGGAACAACAACAACAATCACCACCTCAACTTCCTCCTCCTTCCGCCATGGATTTCGATCTGGACTTGGAAACTTCGTGGCCTTTGGATCACTTGTCCTTCGTCTCCAATAACCCCATGTCACCTTTTCTGTTCCCAATCTCATCTGAACAACCTTCTTCTCCTCTTTGGCTCTTCTCTGATGCAGAAGATGAAAGGCACAACAACACTCTTGCTTCAGCTCCAGCTTTCTCTGATTTCCACAAGATATTCTCTTGTGATTCAAACTCAGTAACTGAAAAACCAGTGGAGAATGCTAATGATGAAGACAAGAAACTGTTGCCACCCATTGTGGCTATGCCACCATTGGAAATTTTGGATAGATATTGTGTAATAAAGGAAAGGATGACACAAGCGCTTCGATACTTCAAAGAGTTGACAGAACAGAATGTTCTGGCGCAGGTTTGGGCACCTGTTAGAAATGGTAATAGGTTTGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCACCAGTATCGAACGGTGTCCCTGATGTACGTGTTTTCGGCGGATGGAGAGAAAGAAGAAAGTCTTGGACTTCCTGGTCGAGTTTATCAGCAAAAAGTACCAGAATGGACACCTGATGTTCAGTATTATTCTACTAAGGAGTATCCTCGCAGAGATCATGCACAACATTACAATGTCCGCGGTACCTTGGCTTTGCCTGTCTTTGAACCTTCAATGCAGTCTTGTGTAGGTGTGTTGGAGTTGATCATGACTTCACAGAAGATTAACTATGCTCCTGAAGTTGACAAAATTTGCAGAGCTCTTGAGGCAGTGAATTTGAAGAGTTCAGAAATTTTAGGCCACCAATACACTCAGATTTGTAATGAAGGCCGCCAGAATGCGCTAGCAGAGATCTTGGAGATATTGACAGTGGTTTGCGAAACTCACAATTTACCTTTGGCGCAAACATGGGTTCCATGTAGGCATCGGAGTGTTCTGGCCCATGGAGGTGGCCTAAAGAAAAGTTGTTCAAGTTTTGATGGTAGTTGCATGGGGAAAGTTTGCATGTCTACAACTGATATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTCCGAGAGGCCTGTGTCGAACATCACTTACAGCAAGGTCAAGGGGTTGCTGGCAGGGCTTTTTCTTCACATAGCATGAGCTTCTGCAGGAACATTACCCGATTCTGCAAAATTGATTACCCTTTAGTTCATTATGCTCTCATGTTTGGGTTAACTAGCTCCTTTTCAATCTGTTTGCGAAGCTCGCACACCGGAGATGATGACTATGTATTAGAGTTTTTTCTGCCACCTAGGATCACAGACTTTAACGAACAGAAGGCTTTGTTGGGATCCATATTGACAATAATGAAACAACATTTCCAGAGCCTTAAGATTGCTTCTGGTGTTGAACTTGAACAGAATGCTTTGGTTGAAACTATTGAAGCAACAATTGAAGGAGTTCATCTGAGGTTTGAATCTATTCCAGTTAGACAGGATGCTTCACCAAATGTGAGGGAGGAATTGGCACAAGATCCGTCGTTGCAGAAAATAATGATGGGCTGTAATGATGGAGGGAGTATTGGTGATCAGATACCCTCCTTAGAAACTAAAAACACAAATAAGCCATCAGAGAGGAAACGTGGGAAAACTGAGAAATCAATAAGTCTTGAAGTTCTACAACGTTATTTTGCTGGGAGTCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCCACTACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAAGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCAGTCCAAGGTGCCGAAGGAGCATTCACTTTGAATCCTCTGAGCACAAGTCCTCTTCCCTTTCCTGAGCATTCTACTCCAAACAAGTTCAGCCAGCAAGCCTCGCCAACTGAACCTCAGATAAGAGAAAATGAATTAGATGCCTCTAAAGTTTTAGAAACAACCAGAATTGCCAGAGCACAGTGTCTCGAGAAAATGGTTAATGATAAAAGCGGTTCTATTCGGGAGGTAGGGAAGGAAACAAAGGGGCCTAGAGCAAAGAGTTGCTCTAGTGCAGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGGTAGCCCTCCTATCGAAAGCTCGCCCGTAAAAGATATATTCATTACATCAAACAATGATCAATGTGTTGGTCTAAGGTCACCAGAGGCAACAATGCAGCCGCCGAATAATACACTGAGCTACCCAACGACTTGCGCTATGCCTGATATGGTGGCAACAGAACTTCAAGAGCCATTCGGAGGAATGCTAGTAGAAGATGCCGGAAGTTCTAAAGACTTGAGAAACCTATGTCCTTCTGTAGCTGAGGCAATTGTGGAGGACATGGCCCCGGAACCTTGCCGGACTAATCCTCCATTTTCTGGGTTGGCTCCCAAACAATGCATGGATCCCCTTAAGGAGACAGTGACACCTTTTGCATCTAGAAAAGAAATGAAGACTGTCACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTTTCTTTGAATTGTGGAATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGGTTGAAACTAGAAGTAGGTACTTTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCATGTGATGCAGATCTACAAGAGTGCATAGATGTTTCAAGATCATCAGCAAGTAACATAATAAGAGTTTTGGTGCATGAAATAACTTCCCATCTTGGAAGCTCATGCGAGAGCTCAGGGGAGTAA 2910 0.4302 MSESEEDKTDFASPKSKEEQQQQSPPQLPPPSAMDFDLDLETSWPLDHLSFVSNNPMSPFLFPISSEQPSSPLWLFSDAEDERHNNTLASAPAFSDFHKIFSCDSNSVTEKPVENANDEDKKLLPPIVAMPPLEILDRYCVIKERMTQALRYFKELTEQNVLAQVWAPVRNGNRFVLTTSGQPFVLDPHSNGLHQYRTVSLMYVFSADGEKEESLGLPGRVYQQKVPEWTPDVQYYSTKEYPRRDHAQHYNVRGTLALPVFEPSMQSCVGVLELIMTSQKINYAPEVDKICRALEAVNLKSSEILGHQYTQICNEGRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFSSHSMSFCRNITRFCKIDYPLVHYALMFGLTSSFSICLRSSHTGDDDYVLEFFLPPRITDFNEQKALLGSILTIMKQHFQSLKIASGVELEQNALVETIEATIEGVHLRFESIPVRQDASPNVREELAQDPSLQKIMMGCNDGGSIGDQIPSLETKNTNKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFTLNPLSTSPLPFPEHSTPNKFSQQASPTEPQIRENELDASKVLETTRIARAQCLEKMVNDKSGSIREVGKETKGPRAKSCSSADSTNPTSHGSCHGSPPIESSPVKDIFITSNNDQCVGLRSPEATMQPPNNTLSYPTTCAMPDMVATELQEPFGGMLVEDAGSSKDLRNLCPSVAEAIVEDMAPEPCRTNPPFSGLAPKQCMDPLKETVTPFASRKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECIDVSRSSASNIIRVLVHEITSHLGSSCESSGE* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3567 969 SMART PB1_new 874 956 IPR000270 GO:0005515
Ahy19g3567 969 PANTHER PROTEIN NLP8 18 968 IPR045012 GO:0003700
Ahy19g3567 969 MobiDBLite consensus disorder prediction 656 690 - -
Ahy19g3567 969 MobiDBLite consensus disorder prediction 1 15 - -
Ahy19g3567 969 MobiDBLite consensus disorder prediction 1 37 - -
Ahy19g3567 969 MobiDBLite consensus disorder prediction 715 759 - -
Ahy19g3567 969 Pfam PB1 domain 874 955 IPR000270 GO:0005515
Ahy19g3567 969 MobiDBLite consensus disorder prediction 656 686 - -
Ahy19g3567 969 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
Ahy19g3567 969 MobiDBLite consensus disorder prediction 558 582 - -
Ahy19g3567 969 ProSiteProfiles PB1 domain profile. 874 956 IPR000270 GO:0005515
Ahy19g3567 969 Pfam RWP-RK domain 584 632 IPR003035 -
Ahy19g3567 969 MobiDBLite consensus disorder prediction 731 750 - -
Ahy19g3567 969 Gene3D - 871 955 - -
Ahy19g3567 969 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 18 968 - -
Ahy19g3567 969 CDD PB1_NLP 875 955 IPR034891 -
Ahy19g3567 969 SUPERFAMILY CAD & PB1 domains 872 960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3567 Ahy-Chr19 158336472 158340544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3567 276 969 NLP Transcription Factor Family AT4G24020 53.270 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ahy19g3567 PB1 9.60E-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3567 - - aip:107618129 1940.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3567 19 158336472 158340544 Ahy9g2060 9 109144432 109148504 hybridization
Ahy15g3547 15 158289205 158293653 Ahy19g3567 19 158336472 158340544 PCT
Ahy5g3138 5 113225907 113230420 Ahy19g3567 19 158336472 158340544 PCT
Ahy19g3567 19 158336472 158340544 Ahy15g3547 15 158289205 158293653 PCT
Ahy19g3567 19 158336472 158340544 Ahy5g3138 5 113225907 113230420 PCT