Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3557 ATGGTGAGTCAGAGGCAGCGACTTGCACGGAAGCGCTTCAAAGAGGAGAACCCTGAGCTCTTTCCCAAGCCCGAGCCCACGCCTCCCAAGGACCCTGACAAAAAGAAGAAGAAGAAGAAGAGCAACACATTTAAGAGCAGCTCCATAAAACGCAGAAGCGATGGCTCCGAAGAACTCGGCGTCTCTAAGAAGCCTTTCAAGAGCAATTACCGAAAGCACCCTCTCAGAGTCCCCGGCATGAAGCCCGGTGACACCTGCTTCATCTGCAAGGCCGCCGACCATATTGCCAAGTCTTGTCCTCAAAAAGCTGAATGGGAGAAGAATAAGATATGCTTGCGGTGTCGACGGCGTGGTCACCGAGCTAAGAATTGCCCTGAAGTTCAAGTTGGTGCCAAGGATGACAAGTATTGTTACAATTGTGGAGAAACTGGTCATTCACTTGCAAATTGTCCCCACCCTGTTCAAGAAGGAGGGACAAAGTTTGCAGAGTGCTTTGTCTGTAAACAGCAAGGACACTTGAGTAAAAACTGCCCTCAAAATGCTCATGGCATCTATCCTAAGGGTGGTTGTTGTAAAATATGTGGTGGCGTGACACATTTGGCAAGGGATTGTCCCGAAAAAGGGAAGAAAGCTCCTTTTGCTGCTAATGGGCCTGCTGATGGATCAATGAGACTGAGAAATGAACAGAGGCCTTGTGGAACGATAACCAAATTTGTGAGCGGGGATGACATTGAGGATGACTTCATGACAGATGACATAAATAACAGAGACAAGGACAAGTCCTCTAAGTCCAAAGACGGTCAAGCAAAACCAAAGAATAAGGGTCCTAAAGTTGTGAACTTCAGGTTGAATTTTGTTGCATCATTTATCGGTGTTCTGTATTTGCACTTGAATTTAGTTCAAGCAAAGCGACAGATTTGGCAACTGAAACTAGGGTTGCGCATGGAGCCTGAAGCCAGGTCCAGAGACGATCACAGCAACCCTAATCCTCTTTCTTCTCCGCAACACACCACCACCAACAACAAGAAGAGGAGGAGGAAGCACAATCATGCTCCAACTCCACAACCCCCCACTCACCGCCACCGCTACAACACACGTCCTAAAGCTAACCCTAACCCTAACCCCAATTCAGGCTCCGCGGTGGTTCAGCAATTGAAGGAAACTGGTGCAGAGAACCCCCAGTTATTCTCTAAGCATGAATTGGCAGCTAAATTAGTTGACTTAGCTGGAAAAGAAAACGGGCAAGGTAAATATGAAGGTGCTGCACTCCAACTGGAACCTGAGGAGAAGTTGTCAAAGAATGCCAGGAGGAGGAGGAAGAACAAAAACAAGAACAATGCACTCAATAATGAAGTGGCAGAAGCAGAACCCACCAAACACAATCACAAGAACAAAGAGAAGAAGAAAAGTAAGAGATTGCTTCGGAGCAACGTGTCAGAATCTAACAACTACAATTCTGAGTCAACTGATGAAATCCCTTTGAGAACAGGCAATGCCAATTCACCTCATCATACCCGGAGTCAGGGAACTAAAGCACTACTCACTGGAGTGGCCTATGATGAGTGTAGGTGTGTCAATCATGCCAAGTGCCTGGTCATAAATTCTGGAAATGTCCGAAGAGGAAAGGTCGACACATTCACGAGGAAATTTGCTTCTTTTGTGGGGAATTCGGTCACACGCTTGCAAAATGCTCGGTTTCTACAGCAGGGGGAGGACGATTTGCTAGGTGCTTATTGTGTTTTGCCCATGGACACTTCACTAATAAGTGTCCACAAACTTGTCATGGAATCAGAGGTTGCTGCTAATGGGCCTATTGACAAAAGATCTCTTCCTCTGTTTCTCTCTCATTTTTTTTCTTGTTTCTTTCCCAAATCTCTAACTCATTTTCTTTCTCATTTCTCCTTTGAGGCTTTCTCCATCAACGACGACATCATGGCGAACGCGGCATCTGGAATGGCTGTTAATGATGCATGTAAATTGAAGTTTCTGGAGTTAAAGGCAAAGAGGAATTACCGATTCATTGTGTTCAGGATTGAGAACCAAGAAGTGGTGGTGGAGAAAGTCGGAAGCCCCGACGAAACCTATGATGACTTCACTGCTTCTCTACCTGCTAATGAGTGCCGATATGCTGTCTTTGATTTCGATTTCACTACGGACGAGAACTGTCAGAAAAGCAAAATTTTCTTCATTGCATGGGCACCGGATACATCAAGAGTGAGAGAAAAGATGGTGTATGCGAGCTCCAAGGATAGATTCAAGAGGGAACTCGATGGCATTCAAGTTGAATTGCAAGCAACGGATCCAAGTGAGATGAGCTTTGACATCATAAAAGCCCGGGCAATATAA 2346 0.4574 MVSQRQRLARKRFKEENPELFPKPEPTPPKDPDKKKKKKKSNTFKSSSIKRRSDGSEELGVSKKPFKSNYRKHPLRVPGMKPGDTCFICKAADHIAKSCPQKAEWEKNKICLRCRRRGHRAKNCPEVQVGAKDDKYCYNCGETGHSLANCPHPVQEGGTKFAECFVCKQQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPEKGKKAPFAANGPADGSMRLRNEQRPCGTITKFVSGDDIEDDFMTDDINNRDKDKSSKSKDGQAKPKNKGPKVVNFRLNFVASFIGVLYLHLNLVQAKRQIWQLKLGLRMEPEARSRDDHSNPNPLSSPQHTTTNNKKRRRKHNHAPTPQPPTHRHRYNTRPKANPNPNPNSGSAVVQQLKETGAENPQLFSKHELAAKLVDLAGKENGQGKYEGAALQLEPEEKLSKNARRRRKNKNKNNALNNEVAEAEPTKHNHKNKEKKKSKRLLRSNVSESNNYNSESTDEIPLRTGNANSPHHTRSQGTKALLTGVAYDECRCVNHAKCLVINSGNVRRGKVDTFTRKFASFVGNSVTRLQNARFLQQGEDDLLGAYCVLPMDTSLISVHKLVMESEVAANGPIDKRSLPLFLSHFFSCFFPKSLTHFLSHFSFEAFSINDDIMANAASGMAVNDACKLKFLELKAKRNYRFIVFRIENQEVVVEKVGSPDETYDDFTASLPANECRYAVFDFDFTTDENCQKSKIFFIAWAPDTSRVREKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAI* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3557 781 Gene3D - 78 133 - -
Ahy19g3557 781 MobiDBLite consensus disorder prediction 339 366 - -
Ahy19g3557 781 MobiDBLite consensus disorder prediction 1 62 - -
Ahy19g3557 781 Pfam Zinc knuckle 164 179 IPR001878 GO:0003676|GO:0008270
Ahy19g3557 781 Pfam Zinc knuckle 136 152 IPR001878 GO:0003676|GO:0008270
Ahy19g3557 781 ProSiteProfiles Zinc finger CCHC-type profile. 137 151 IPR001878 GO:0003676|GO:0008270
Ahy19g3557 781 MobiDBLite consensus disorder prediction 8 32 - -
Ahy19g3557 781 SMART adf_2 656 781 IPR002108 GO:0003779
Ahy19g3557 781 MobiDBLite consensus disorder prediction 318 380 - -
Ahy19g3557 781 SUPERFAMILY Retrovirus zinc finger-like domains 132 180 IPR036875 GO:0003676|GO:0008270
Ahy19g3557 781 SMART c2hcfinal6 110 126 IPR001878 GO:0003676|GO:0008270
Ahy19g3557 781 SMART c2hcfinal6 85 101 IPR001878 GO:0003676|GO:0008270
Ahy19g3557 781 SMART c2hcfinal6 163 179 IPR001878 GO:0003676|GO:0008270
Ahy19g3557 781 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Ahy19g3557 781 SMART c2hcfinal6 190 206 IPR001878 GO:0003676|GO:0008270
Ahy19g3557 781 CDD ADF_cofilin_like 650 780 IPR017904 GO:0015629|GO:0030042
Ahy19g3557 781 Gene3D - 134 185 - -
Ahy19g3557 781 MobiDBLite consensus disorder prediction 418 508 - -
Ahy19g3557 781 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 131 181 - -
Ahy19g3557 781 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 620 781 - -
Ahy19g3557 781 MobiDBLite consensus disorder prediction 476 508 - -
Ahy19g3557 781 SUPERFAMILY Actin depolymerizing proteins 641 779 - -
Ahy19g3557 781 ProSiteProfiles Zinc finger CCHC-type profile. 164 179 IPR001878 GO:0003676|GO:0008270
Ahy19g3557 781 Pfam Cofilin/tropomyosin-type actin-binding protein 658 778 IPR002108 GO:0003779
Ahy19g3557 781 PANTHER COFILIN-RELATED 131 181 IPR017904 GO:0015629|GO:0030042
Ahy19g3557 781 PANTHER COFILIN-RELATED 620 781 IPR017904 GO:0015629|GO:0030042
Ahy19g3557 781 MobiDBLite consensus disorder prediction 251 272 - -
Ahy19g3557 781 ProSiteProfiles ADF-H domain profile. 651 781 IPR002108 GO:0003779
Ahy19g3557 781 SUPERFAMILY Retrovirus zinc finger-like domains 79 128 IPR036875 GO:0003676|GO:0008270
Ahy19g3557 781 Gene3D Severin 640 781 IPR029006 -
Ahy19g3557 781 ProSiteProfiles Zinc finger CCHC-type profile. 111 126 IPR001878 GO:0003676|GO:0008270
Ahy19g3557 781 MobiDBLite consensus disorder prediction 246 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3557 Ahy-Chr19 158226401 158234265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3557 111 207 C2H2 Transcription Factor Family AT5G20220 29.565 1.25e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3557 - K17578 ahf:112779196 1447.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3557 19 158226401 158234265 Ahy19g3557 19 158226401 158234265 ECH
Ahy19g3557 19 158226401 158234265 Ahy9g2068 9 109413503 109420918 hybridization