Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3550 ATGGGAAAAGCACCTTGTTGTGACAAACATGGAGTGAAGAGGGGATCTTGGACACCTGAAGAAGATGAGGCTTTAGTTGAGCATATCAAGAAGCATGGAGAAGGAAGTTGGCGCACTCTCCCCAAACATGCAGGACTACAGCGATGTGGAAAAAGTTGTAGGCTGAGGTGGATTAATTATCTAAGACCTGGCATTAAGCGTGGCCCATTTACTTCTGAAGAAGAGACTAATATCATTCAACTTCATGCCTTGCTTGGCAACAGGTGGGCTGCTATAGCTTCTCAACTGCCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACCCATCTAAAGAAGAATCTTCATCACCACTCCGGAGGGACTAAACAACCTTGTCTCAGCCCTCATGCAGGGATTGTCAAGTCGGAATCTCCTTCGACTCGGCACATGGTACAATGGGAAAGTGCTAGAGTTGAGGCTGAGGCAAGGTTGTCAATGGAATCCTCATTGAACAATTCATGGTCACCAGCTAAAACTTGCCCTGATTACTTTCTTAGATTATGGAATTCCGAGGTTGGAGAGTCATTTCGTGGACTCAAGGGAAGGGAAAGAGTAGGAGAGAGTCATAGCCTTGTCTCACAGGCTTCAACACCATCATCATCATCAAAATTGGAGTCATGTTCAGATGCCTCGTTGCATTTGAAAAACACTGTTCAAGAACAAATAAGTAGCTGCAAACCAAAGCTTGAATATGACACAGGTGGATCAGATTCCGGCAACTATGAGTACCTTGATACTTCTGATTCTGCATTCAAACAATATCTGGATATGCCTGATGAAGATATAGAATTCTTGGACCACACTGACAGTTTCCTGAACCCTCCTGATGATGATGATGAGGAGGATGATAGATGTGACTAA 906 0.4393 MGKAPCCDKHGVKRGSWTPEEDEALVEHIKKHGEGSWRTLPKHAGLQRCGKSCRLRWINYLRPGIKRGPFTSEEETNIIQLHALLGNRWAAIASQLPGRTDNEIKNYWNTHLKKNLHHHSGGTKQPCLSPHAGIVKSESPSTRHMVQWESARVEAEARLSMESSLNNSWSPAKTCPDYFLRLWNSEVGESFRGLKGRERVGESHSLVSQASTPSSSSKLESCSDASLHLKNTVQEQISSCKPKLEYDTGGSDSGNYEYLDTSDSAFKQYLDMPDEDIEFLDHTDSFLNPPDDDDEEDDRCD* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3550 301 CDD SANT 69 112 IPR001005 -
Ahy19g3550 301 CDD SANT 16 61 IPR001005 -
Ahy19g3550 301 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 284 - -
Ahy19g3550 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Ahy19g3550 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy19g3550 301 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ahy19g3550 301 MobiDBLite consensus disorder prediction 281 301 - -
Ahy19g3550 301 Gene3D - 14 66 - -
Ahy19g3550 301 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ahy19g3550 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ahy19g3550 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy19g3550 301 MobiDBLite consensus disorder prediction 204 220 - -
Ahy19g3550 301 Gene3D - 69 132 - -
Ahy19g3550 301 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 284 - -
Ahy19g3550 301 SMART sant 66 114 IPR001005 -
Ahy19g3550 301 SMART sant 13 63 IPR001005 -
Ahy19g3550 301 MobiDBLite consensus disorder prediction 198 220 - -
Ahy19g3550 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3550 Ahy-Chr19 158200079 158201994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3550 1 290 MYB Transcription Factor Family AT3G61250 54.967 6.02e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy19g3550 Myb_DNA-binding 3.20E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3550 K09422 - gmx:100782075 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3513 15 157883975 157885646 Ahy19g3550 19 158200079 158201994 ECH
Ahy19g3550 19 158200079 158201994 Ahy19g3550 19 158200079 158201994 ECH
Ahy19g3550 19 158200079 158201994 Ahy9g2076 9 109459617 109462036 hybridization