Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3545 ATGCCAAATAAGTTAAGCAACAGCTTGAATGACATTAATAAAAGATCAAAGAAGGAATCATGCATTGAGAAATTGGAGAAACACATTGTTCAGAATCCTTCGGACAGGGTTGGCAACTCAATGGCTCAATTTGAAGACCTCCCAGAAGAAGATCCGGAAGAGGAGGAATTGTGTGAGGAGCTAGAGGAAGATCCAGAGGAGGAATCAGCTTCGGAAGTAGAGGATGATCCACACGAGGAATCAGCTGAGGAACTGGAGGAAGATCCAGAGGAGGAATTAGTTGAGGAAGATCCAGAAGAGGAATCAACTGAGGAAGTAGAGGAAGATCCAAATGAGGAATCAGCCAAGGAACTTGAGGAAGATCAAGAGGAGGAATCAGCTGAGGAACTGGAGGAAGATCCAGAGGAAGAATCAGCTGAGGAACTGGAGGAAGATGTACAGGAGGAATCAGCTGAGGAACTGGAGGAAGATCCAGAGGAAGAATCAGCTGAGGAACTGGAGGAAGATGTACAGGAGGAATCAGCCGAGGAACTGGAGGAAGATCCAGAGGAGGAATCAGGTGAAGAAGTAGAGGAAGATGTACAGGAGGAATCAGTCAAGGAAGTGGAGGAAGATCCCGAGGAGGAATCAGCTGAGGAACTGGAGGAAGATCCAGAGGAGGAATCAACTGAGGAACTAGAGGAAGATCCTGAAGAGGATCCAGTAGTAAACATCAAGTGGGAGGGTGCATCATGTAATGAAGTTCCATTATTATCCCAGGCATCGTATCAATCACAGAAGAAATGCAAGCAGGAGGGAACGCAAAGCCAAAATTTAGAGCCAGAAGCTTCTCGACTGGAACTCAGTAGTGACAAGTCGATTTCTGTGGCAACTACCGATAAAGTTGGTTCCAAAGAAGAAGTTTCAGGAAGGTCGGCAAAACAAAGGCGTAGTAGATGGGAACCACAACCTCGTGGAGATGGAACGAATGATGATCTGACTTGCAAAAGGAGGAAAACCAGGTGGTCTAGTGAAGAAACTCAAATGAAAATGCTGGGTCCACTTCAGCTACCTAACTTAAATATCATATCTAAGTTGATGACATTAAACCCGGATTTTAACCCTCCTCCTGAATACAAGCCCCCAAAGCTCTTAAAAAAGCTTTACATACCAGTGAAAGAATATCCAGAGTACAATTTCATTGGACTTATTATTGGTCCTCGTGGAAACACACAGAAGAAGATGGAAAAAGAATCTGGGGCTACGATTCTTCTAAGAGGTAAAGGCTCCTCAAAAGCAACTAGCAAATGTGACTCTGAGGAAGAAGATTTACATGTTTTAATAGAAGCTGACAACCAAAAATCACTGGATGCAGCAGTTGGCATGGTTGAAAAACTGCTAATTCCAGTTGAAGAAGGACAAAATGAGCACAAGCGCGAACAGTTAAAGGAGCTGGCTCAACTGAAAGCAACACGGAGAGATGAAAATGTGTGCAGTGTGTGTGGTGATAAGGGACACAGACATTATGCATGCCCTAACCTTAGTTCAACTTTTAATTTCGATTTATTTGACACTGGTTGTAGCAGCAGCCTTTCAATCCCAACTTATCCTGCTACTGCATTGTTTCCACCAAACAGTAACTTTCCATGCGGATCTGGAACAAGTCTTAATTCAGTGCAGAATAGACAAATAAGGCCTGGAAAGGAAATAAACGACAAAAACCTTTATGTTGGTTATTTGCCGCCGTCAATTGACAAGAATAGATTGATTGAGCTGTTCTCCCCATTTGGTAAGATCACTGAAGCTGATGTTATTAAGGATCGAACCACTGGCATCAGTAAAGGTTATGGCTTTGTCAAATATGAAGATTCCCAGGATGCAGCTTTAGCTATAATGCATCTAAATGGTTTCAGAATTGATGGAAAGTTTTTGAAAGTGAGGATAGCCGGACTGCAGGCAAATAATGAAACCCCAAGTCTAAACCTTATTCCTCAGATCCCATTGCCTGCAACTGTCTCCACAAATGTCATTCACCAAACGAATCTTTCTGATCCATTACATTTCATGCTGCCAGAATACCAATCTTCATTTCATGACAGCAGTAGCACAAATATGTTTCCATGTAATATCAACTCAGAGGATGGTGATCCTCTGAAGGTAAATGCTTTGCTTACTCCCCATCCAGGTTATTCTGGCTACTTTTCAGATCAAAGTTTGTTCTCATCAAAAGATTCAACCGAACATTTTCCTGGTGATCCAGGCAATCTTGGTAATTTCAGTCCTTTCTTATGA 2271 0.4258 MPNKLSNSLNDINKRSKKESCIEKLEKHIVQNPSDRVGNSMAQFEDLPEEDPEEEELCEELEEDPEEESASEVEDDPHEESAEELEEDPEEELVEEDPEEESTEEVEEDPNEESAKELEEDQEEESAEELEEDPEEESAEELEEDVQEESAEELEEDPEEESAEELEEDVQEESAEELEEDPEEESGEEVEEDVQEESVKEVEEDPEEESAEELEEDPEEESTEELEEDPEEDPVVNIKWEGASCNEVPLLSQASYQSQKKCKQEGTQSQNLEPEASRLELSSDKSISVATTDKVGSKEEVSGRSAKQRRSRWEPQPRGDGTNDDLTCKRRKTRWSSEETQMKMLGPLQLPNLNIISKLMTLNPDFNPPPEYKPPKLLKKLYIPVKEYPEYNFIGLIIGPRGNTQKKMEKESGATILLRGKGSSKATSKCDSEEEDLHVLIEADNQKSLDAAVGMVEKLLIPVEEGQNEHKREQLKELAQLKATRRDENVCSVCGDKGHRHYACPNLSSTFNFDLFDTGCSSSLSIPTYPATALFPPNSNFPCGSGTSLNSVQNRQIRPGKEINDKNLYVGYLPPSIDKNRLIELFSPFGKITEADVIKDRTTGISKGYGFVKYEDSQDAALAIMHLNGFRIDGKFLKVRIAGLQANNETPSLNLIPQIPLPATVSTNVIHQTNLSDPLHFMLPEYQSSFHDSSSTNMFPCNINSEDGDPLKVNALLTPHPGYSGYFSDQSLFSSKDSTEHFPGDPGNLGNFSPFL* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3545 756 Gene3D - 545 650 IPR012677 -
Ahy19g3545 756 MobiDBLite consensus disorder prediction 737 756 - -
Ahy19g3545 756 ProSiteProfiles Type-1 KH domain profile. 392 456 - -
Ahy19g3545 756 PANTHER SPLICING FACTOR-LIKE PROTEIN 1 354 695 - -
Ahy19g3545 756 PANTHER SPLICING FACTOR-LIKE PROTEIN 1 223 353 - -
Ahy19g3545 756 MobiDBLite consensus disorder prediction 23 241 - -
Ahy19g3545 756 SUPERFAMILY RNA-binding domain, RBD 556 642 IPR035979 GO:0003676
Ahy19g3545 756 MobiDBLite consensus disorder prediction 297 337 - -
Ahy19g3545 756 PANTHER RNA-BINDING PROTEIN RELATED 354 695 IPR045071 -
Ahy19g3545 756 PANTHER RNA-BINDING PROTEIN RELATED 223 353 IPR045071 -
Ahy19g3545 756 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 568 638 IPR000504 GO:0003723
Ahy19g3545 756 Coils Coil 160 180 - -
Ahy19g3545 756 Coils Coil 111 133 - -
Ahy19g3545 756 MobiDBLite consensus disorder prediction 46 234 - -
Ahy19g3545 756 Coils Coil 136 156 - -
Ahy19g3545 756 Pfam KH domain 392 457 IPR004088 GO:0003723
Ahy19g3545 756 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 566 644 IPR000504 GO:0003723
Ahy19g3545 756 MobiDBLite consensus disorder prediction 255 295 - -
Ahy19g3545 756 MobiDBLite consensus disorder prediction 255 337 - -
Ahy19g3545 756 Gene3D K Homology domain, type 1 330 492 IPR036612 GO:0003723
Ahy19g3545 756 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 377 494 IPR036612 GO:0003723
Ahy19g3545 756 SMART rrm1_1 567 640 IPR000504 GO:0003723
Ahy19g3545 756 CDD SF1_like-KH 379 486 - -
Ahy19g3545 756 SMART kh_6 377 461 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3545 Ahy-Chr19 158177347 158180475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3545 490 642 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 3.36e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3545 K13095 - csin:114293476 356.681