Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3542 ATGAAACCGCTTTCCTCCAACGACAACCCCTGGGACCCTTCAACCTTCCTCTTCATCGCCACCATCCTCGGAACCTTCATATTCCTCGCCGCGTTCGTAGCCTTCCTCCGCCGCTGCACAGAGCCATACTTTACTCAACAACAGAGCAATATCACACACTTGCCCTGTTCCTGCTGCAACGGCGGCATCAGCCCCGACATCCTCGAAACCTTCCCCATCGTGTTCTATTCCAGCATCAAGGACCTCAGAATCCGCAAAGAAGCTCCGCTAGAGTGTGCCGTCTGCCTCACCGAGTTCACCGGCAACGACACTCTTCGGTTGCTTCCACACTGCAACCACGTGTTCCACCCTCCCTGCATCGACGCCTGGCTCTCTTCCCACGTCACCTGCCCCGTTTGCCGCGCCAATCTCAACCAATATCCCTCCCAAGTCGCCATTTCGGTGATAACACAATTGAGCGGCGAGGGAGAAGAAGAACACGAAGAAGACGGTTCTGGAAACAGAGCAGAACAGAGCGTGGGTGGCGAGAGCATAATTGAGGGGAGCCCGTTGGCGCGTGACGCGAGTGAGGGACAGCGGAACAACGAAGAAGATAAAGGGATGCCGGAAAGAGCGGCAAAAGGGAAGCTTGGTGGGAAGGGGAGGGTTCTGAAGAGGTCGAATACGACGGGGCACTCGGTGGTGGAGGCAGGAGAGTGTATGGAGAGGTATACGCTGAGGTTGCCGGAGGATGTGAGGAGGTACATTATGGTGAACCATGGGGTGATGATGACGCAGCGTTCGGCGAGCTACAACGCGGCGGAGTGTTCGAAGAAAGGATTGTGTTGGAGTGACACGGAAGGAGGTAGCAGCAGAGGTAAGAAGGGTCAGAGCTCTGTTAGAGGGAAGGGAAGAGTATGGAAGAATAATGGAGGGCAGTGA 921 0.557 MKPLSSNDNPWDPSTFLFIATILGTFIFLAAFVAFLRRCTEPYFTQQQSNITHLPCSCCNGGISPDILETFPIVFYSSIKDLRIRKEAPLECAVCLTEFTGNDTLRLLPHCNHVFHPPCIDAWLSSHVTCPVCRANLNQYPSQVAISVITQLSGEGEEEHEEDGSGNRAEQSVGGESIIEGSPLARDASEGQRNNEEDKGMPERAAKGKLGGKGRVLKRSNTTGHSVVEAGECMERYTLRLPEDVRRYIMVNHGVMMTQRSASYNAAECSKKGLCWSDTEGGSSRGKKGQSSVRGKGRVWKNNGGQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3542 306 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Ahy19g3542 306 MobiDBLite consensus disorder prediction 190 210 - -
Ahy19g3542 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 142 IPR013083 -
Ahy19g3542 306 PANTHER RING FINGER DOMAIN-CONTAINING 10 268 - -
Ahy19g3542 306 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 268 - -
Ahy19g3542 306 SMART ring_2 92 133 IPR001841 -
Ahy19g3542 306 MobiDBLite consensus disorder prediction 153 223 - -
Ahy19g3542 306 Pfam Ring finger domain 91 134 IPR001841 -
Ahy19g3542 306 SUPERFAMILY RING/U-box 91 143 - -
Ahy19g3542 306 MobiDBLite consensus disorder prediction 277 306 - -
Ahy19g3542 306 CDD RING-H2_PA-TM-RING 91 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3542 Ahy-Chr19 158160787 158161707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3542 13 250 Rapid Response to Elicitors AT3G05200 36.515 9.22e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3542 K10664 - gmx:100782532 210.69