Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3520 ATGTTTCCCATCAATCATATTGTCAATAACCAGCTTCCGAGTAGCTCCTCGGAGAACACTGTCTTGTCATCGCCGTTGTCGGAGGGGGAGGTAGTGCTGGCGGCTAGCCACCCCAAGAAGAGAGCGGGGAGGAAAAAGTTCAGGGAGACGCGCCACCCTGTGTACCGCGGCGTGCGGCGGAGGAACTCCGGCAAGTGGGTTTGCGAGGTGAGGGAGCCAAACAAGAAGACGAGGATATGGCTCGGGACGTTCGCCACTGCGGAGATGGCAGCGCGTGCGCACGACGTGGCCGCTATCGCTCTCAGGGGGAGGTCTGCCTGCCTCAACTTCGCAGATTCGGCGTGGCGCCTTCCCATGCCGGAGACGACAGACGCAAGAGACATCCAGAAGGCTGCAGCGGAAGCTGCCGAGGCATTCCGCCCCGTGACGGAATTGGAGACTGGTGAAGTGAGGCGGGAGGGTGCTGTGGGGGTAAAGGCGGCGTCAGAGACGACCATGGTGGCGGAGGCGGCGGAAGAGCAAGAAGGAGAAGGGGTGCCGGAGATTTGGAGGACCATGGCGTTGATGTCTCCAACGCATTACAGTGGGAGTGAGTTTGGCGTTGATGACGTGGAATTTGATGATGCCGAAGTATCGTTGTGGAGTTATTCGATTTAA 657 0.5906 MFPINHIVNNQLPSSSSENTVLSSPLSEGEVVLAASHPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFATAEMAARAHDVAAIALRGRSACLNFADSAWRLPMPETTDARDIQKAAAEAAEAFRPVTELETGEVRREGAVGVKAASETTMVAEAAEEQEGEGVPEIWRTMALMSPTHYSGSEFGVDDVEFDDAEVSLWSYSI* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3520 218 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Ahy19g3520 218 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Ahy19g3520 218 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Ahy19g3520 218 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Ahy19g3520 218 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Ahy19g3520 218 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Ahy19g3520 218 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Ahy19g3520 218 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 18 218 - -
Ahy19g3520 218 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Ahy19g3520 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 18 218 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3520 Ahy-Chr19 157944512 157945847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3520 24 216 AP2-EREBP Transcription Factor Family AT4G25470 59.314 4.30e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy19g3520 AP2 1.70E-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3520 - K09286 aprc:113872706 281.567