Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3518 ATGAGCCGCCATAGGAACCCAGCACAAACTTGCCCTCCCACCATAATACCACATCAACTCCCCTACGGCTATGGCTATGTACCATCACCACCAGCAGCCGCGCCTCCAACTTCCCACTCCGGCACCATGCGCTACAGGGGCACGCGTCTCCGAAGTGGGAAGTGGGTGTCGGAGATAAGGTTACCACGTACCACGAAGCGCATTTGGCTGGGGACATACGCATCTCCTGAGATGGCTGCTGCTGCTTACGATGCTGCTACTCTTGCATTGAGGGGCCCCGAAGCCCATCTCAACTTCCCCAATTTCATACTCTCTTACCCTATTCCTGCTTCATTCTCCGATGCTGATATTCGCGCTGCCGCTGCCGTCGCTGCCTCCTTCGTCGCTCAGTATCGGACTACCACCGAGGCGCCACCAGCGATTACTACTTCTGCTGCTGCTGATAGCTATTCCTACAACAGTAGTATCGGACAAGTAGAAGGGATGATAGGAGATTATTTTGATGAGGATGAGCTGTTGAATATGCCGAGTGTGATCCAAGACATGGCCAGAGGACTGCAGATTAGCCCCCCAAGGATGCCTTCTTTCTACTCCGATGATTCCTCCGACGACATTTATTCGGACCTGTATACCCTTTGGTAA 642 0.5327 MSRHRNPAQTCPPTIIPHQLPYGYGYVPSPPAAAPPTSHSGTMRYRGTRLRSGKWVSEIRLPRTTKRIWLGTYASPEMAAAAYDAATLALRGPEAHLNFPNFILSYPIPASFSDADIRAAAAVAASFVAQYRTTTEAPPAITTSAAADSYSYNSSIGQVEGMIGDYFDEDELLNMPSVIQDMARGLQISPPRMPSFYSDDSSDDIYSDLYTLW* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3518 213 CDD AP2 44 101 IPR001471 GO:0003700|GO:0006355
Ahy19g3518 213 SUPERFAMILY DNA-binding domain 45 101 IPR016177 GO:0003677
Ahy19g3518 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 206 - -
Ahy19g3518 213 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Ahy19g3518 213 ProSiteProfiles AP2/ERF domain profile. 44 100 IPR001471 GO:0003700|GO:0006355
Ahy19g3518 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 39 206 - -
Ahy19g3518 213 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Ahy19g3518 213 PRINTS Ethylene responsive element binding protein signature 82 102 IPR001471 GO:0003700|GO:0006355
Ahy19g3518 213 SMART rav1_2 44 106 IPR001471 GO:0003700|GO:0006355
Ahy19g3518 213 Pfam AP2 domain 45 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3518 Ahy-Chr19 157902899 157903644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3518 45 213 AP2-EREBP Transcription Factor Family AT5G52020 47.429 3.43e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy19g3518 AP2 5.10E-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3518 - - aip:107612168 177.178