Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3508 ATGAATCCTTGGAACCCATGTGATGATTTATACTTTCAGATTTCATCATCTTCTGCTGATTATGACTATTCATCCCTCCCTATAATCCAAACATCACCATCAGCCGCGGAAGATCATCATCATCATCAGATCCTGGTTCATGGATATGAATATGATCCTGCTATGATGGATGCAAGTGCAAGTGTACCACCTTGTCCAAATCAAAAGGGAAAGCAGCGAAAAGAGTTGACTCCTAATAATAATGCTTTGGGAGCAGAAGATGGTGATGAGAACAAGAAGTGGATGCATAGGGAGATAGAAAAACAAAGAAGGCAAGAAATGTCAAGACTTTGCACCACCTTTAGAACTCTTCTACCTTTTGAATATATTAAGGGAAAGCGGTCAACTTCTGATCACATGCATGAGGGGGTGAAATACATCAAACACTTACAGAATAGGGTGGAAAAGTTGCAAGCCAAAAGGGATGAGTTAGTGAAGTCGATTAATTTGAGACCTAATAAGAGTGGAAGTAGTTCTTCTTCTTCTTCTACACAGCATGTTCATCATCAAACCTTTGTCATTGTTGAACCCTTCTCTGGGGGAGTTCTGATTAAGTGCAGTTATAGCTTCAGGAACTATGCATTCCCTTTATCAGGAATCTTGGACATTGTGCTTAGACAAGGCCTTAATGTTGTTGATTGTACTTCAATCACCACTGATGATCACAGGTTCATACACACTATCCGATCAGAGGATCCACAAGTGATGACCACTGAGACTGATGACTACACCGAACTGCAAAGAAAGCTTAAGGAAGCTATATCATCATCAAGTAATTAG 819 0.4005 MNPWNPCDDLYFQISSSSADYDYSSLPIIQTSPSAAEDHHHHQILVHGYEYDPAMMDASASVPPCPNQKGKQRKELTPNNNALGAEDGDENKKWMHREIEKQRRQEMSRLCTTFRTLLPFEYIKGKRSTSDHMHEGVKYIKHLQNRVEKLQAKRDELVKSINLRPNKSGSSSSSSSTQHVHHQTFVIVEPFSGGVLIKCSYSFRNYAFPLSGILDIVLRQGLNVVDCTSITTDDHRFIHTIRSEDPQVMTTETDDYTELQRKLKEAISSSSN* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3508 272 MobiDBLite consensus disorder prediction 62 88 - -
Ahy19g3508 272 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 89 271 IPR015660 GO:0003700|GO:0006357
Ahy19g3508 272 CDD bHLH_AtORG2_like 92 162 - -
Ahy19g3508 272 Pfam Helix-loop-helix DNA-binding domain 93 144 IPR011598 GO:0046983
Ahy19g3508 272 Coils Coil 140 160 - -
Ahy19g3508 272 Gene3D - 84 169 IPR036638 GO:0046983
Ahy19g3508 272 PANTHER TRANSCRIPTION FACTOR 89 271 - -
Ahy19g3508 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 162 IPR036638 GO:0046983
Ahy19g3508 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 143 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3508 Ahy-Chr19 157784947 157786916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3508 96 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 38.043 1.95e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy19g3508 HLH 3.00E-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3508 - - adu:107466968 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3508 19 157784947 157786916 Ahy19g3508 19 157784947 157786916 ECH
Ahy19g3508 19 157784947 157786916 Ahy9g2124 9 110000800 110002372 hybridization
Ahy15g3430 15 156758024 156759622 Ahy19g3508 19 157784947 157786916 PCT
Ahy5g3027 5 111731706 111733423 Ahy19g3508 19 157784947 157786916 PCT
Ahy19g3508 19 157784947 157786916 Ahy15g3430 15 156758024 156759622 PCT
Ahy19g3508 19 157784947 157786916 Ahy5g3027 5 111731706 111733423 PCT