Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3494 ATGCCAGTGAGGCAGATGAAAGAAAGCTCTGAGCAACACATTGTGATTAAACCCCATTCTCAGAACCACATGAATAAGGCACCAAAAGCTGCACAAAATGGAAAAGGACCACCACCACCACCACCACAAGAGAACCACCAGCAGCACAACAACAACCACCACCACCACAACCACCAGTCATCACCTCAACCAAGAAACAAAGGGAGAAGAAGGGGCAGAGGTGGGAGAAAATCTGATCAAGGAGAGATTTTGATGAGACCAAGTTGCAGGCCCTGCACTGCTGGTGCTGCTCCTCCTCCTGTGACAGCAAATGGGATTAATAGTAATAATGTTGAGAATGGCTGCAAGATCAGTGGTGGTGATGGTGGTAACATAACAGACATGGGTTTTCCCACTTCAAGCAAATCCTTGAGCTTTGCTCGCAGGCCTGGCTATGGACAAGTTGGGACAAAATGCATTGTCAAGGCTAATCACTTCTTTGCTGAGCTACCGGACAAGGACTTGAACCAATATGATGTAACAATTAGCCCAGAAGTGAGTTCAAGAGCAGTAAATCGGTCCATAATAGCAGAACTTGTGAGGCTTTACAAAGAGTCTGATTTGGGGATGAGGCTTCCTGCTTATGATGGCAGGAAAAGTCTGTACACTGCTGGCCAGCTTCCCTTTGCCTGGAGAGAATTTAAGATAAAGCTTCTTGATGATAATGATGATGGAGTTAATGGCCCCAAAAGGGAAAGGGAATATAGGGTGGTGATCAAGTTTGTTGCTCGTGCAAACTTGCATCACTTGGGCCAGTTTCTAGCCGGCAAGCGAGCTGATGCACCACAGGAGGCACTTCAGATTCTTGATATTGTACTGAGAGAGCTATCAACTAAGAGGTACTGCCCCATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCTCAACGGCTTGGAGAGGGGTTGGAATCATGGTGTGGATTCTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGACATGGCTTCTGCTGCATTCATTGAGCCTCTTCCAGTAGTAGAATTTGTTGGCCAACTATTAGGGAAAGATGTTCTTTCAAGGCCACTGTCGGATGCTGATCGCATTAAGATTAAGAAAGCCCTTAGAGGAGTTAAGGTTGAAGTAACACACAGAGGAAGTGTAAGAAGGAAATATCGCGTTTCAGGATTGACTTCTCAACCAACAAGAGAACTTGTGTTCCCTGTTGATGAGAACTCAACTATGAAGTCAGTGGTTGAATACTTTCAAGAGATGTATGGTTTCACTATTCAATACACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCAAACTACTTACCCATGGAGGCCTGTAAAATTGTGGAGGGGCAAAGGTATACAAAAAGATTGAATGAGAAGCAAATTACTGCACTGCTCAAAGTTACTTGCCAGAGACCACGCGATCGCGAAAATGACATCTTACGGACGGTGCAACATAATTCTTATAATGAAGATCCTTATGCAAAGGAATTTGGTCTTAAAATCAGTGAAAAGCTAGCTTCTGTTGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAATACCATGAAAGTGGGAAAGAAAAGAACTGTTTACCCCAAGTTGGTCAGTGGAACATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCGTGCATTAACTTTTCGCGGAGTGTGCAAGATAGTGTTGCTCGCACATTTTGTCATGAGCTTGCTCAAATGTGTCAAGTGTCTGGCATGGAATTCAATCCAGAGCCTGTCATTCCCATCTACAATGCCAAGCCAGAGCAGGTAGAGAAAGCTTTAAAGCATGTTTATCATGTGTCGACGAACAAAACTAAAGGGAAAGAGTTGGAGCTTTTGTTAGCAATATTGCCTGACAACAATGGATCTCTATATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTGACAAAACATGTCTTCAAGATCACCAAACAGTACTTGGCAAATGTATCTCTAAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTAGATGCTGTAAGCTGCAGAATACCGTTGGTTAGTGACATACCAACCATAATATTCGGAGCAGATGTTACTCACCCTGAAAATGGAGAAGACTCTAGCCCTTCAATAGCTGCTGTAGTAGCATCCCAGGACTGGCCTGAAGTGACAAAATATGCTGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAGCTTATACAAGATTTGTACAAAACTTGGCACGATCCTGTTCGTGGCACAGTCAGCGGTGGCATGATCCGAGATTTGTTGGTTTCGTTTAGAAAGGCGACAGGGCAAAAGCCACTAAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTCTCCTTTATGAATTAGATGCAATCCGGAAGGCATGTGCTTCCTTAGAACCAAACTATCAGCCTCCGGTAACTTTCATAGTTGTACAAAAACGACATCATACACGGTTATTCGCTAACAACCACCGGGACAGGAGCAGTACAGATAAGAGTGGGAATATAATGCCTGGAACTGTTGTTGATTCTAAAATATGCCATCCAACAGAATTTGATTTCTATCTATGCAGTCATGCTGGCATTCAGGGTACAAGTAGGCCTGCCCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAATCTTTGACAAACAATCTGTGTTACACATATGCTAGATGTACTCGATCTGTATCAGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCATTTAGAGCACGTTTCTATATGGAGCCAGATATGCAAGAGAATGACTCTACAGGTGGTGGTAACAGTGGCGGTCGTGGAGGGTCGAAGGGAACTCGAGCAACCGGAGAGTGTGGTGTGAAGCCACTGCCAGCCTTGAAAGAGAATGTGAAGAGAGTAATGTTTTACTGTTGA 3018 0.4364 MPVRQMKESSEQHIVIKPHSQNHMNKAPKAAQNGKGPPPPPPQENHQQHNNNHHHHNHQSSPQPRNKGRRRGRGGRKSDQGEILMRPSCRPCTAGAAPPPVTANGINSNNVENGCKISGGDGGNITDMGFPTSSKSLSFARRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTISPEVSSRAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFAWREFKIKLLDDNDDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTVQHNSYNEDPYAKEFGLKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCHELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNIMPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENDSTGGGNSGGRGGSKGTRATGECGVKPLPALKENVKRVMFYC* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3494 1005 Pfam PAZ domain 374 478 IPR003100 GO:0005515
Ahy19g3494 1005 SMART Piwi_a_2 636 957 IPR003165 GO:0003676
Ahy19g3494 1005 ProSiteProfiles Piwi domain profile. 636 957 IPR003165 GO:0003676
Ahy19g3494 1005 MobiDBLite consensus disorder prediction 51 74 - -
Ahy19g3494 1005 ProSiteProfiles PAZ domain profile. 348 462 IPR003100 GO:0005515
Ahy19g3494 1005 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 66 1004 - -
Ahy19g3494 1005 SUPERFAMILY PAZ domain 342 503 IPR036085 GO:0005515
Ahy19g3494 1005 Pfam Mid domain of argonaute 545 622 IPR032473 -
Ahy19g3494 1005 Gene3D - 705 1005 IPR036397 GO:0003676
Ahy19g3494 1005 SUPERFAMILY Ribonuclease H-like 628 958 IPR012337 -
Ahy19g3494 1005 Pfam Argonaute linker 1 domain 296 345 IPR014811 -
Ahy19g3494 1005 MobiDBLite consensus disorder prediction 963 977 - -
Ahy19g3494 1005 CDD Piwi_ago-like 506 956 IPR045246 -
Ahy19g3494 1005 CDD PAZ_argonaute_like 347 461 - -
Ahy19g3494 1005 PANTHER PROTEIN ARGONAUTE 10 66 1004 - -
Ahy19g3494 1005 Gene3D paz domain 341 466 - -
Ahy19g3494 1005 SMART DUF1785_2 295 347 IPR014811 -
Ahy19g3494 1005 Pfam Piwi domain 637 956 IPR003165 GO:0003676
Ahy19g3494 1005 Gene3D - 526 699 - -
Ahy19g3494 1005 MobiDBLite consensus disorder prediction 961 983 - -
Ahy19g3494 1005 MobiDBLite consensus disorder prediction 1 96 - -
Ahy19g3494 1005 Pfam N-terminal domain of argonaute 151 286 IPR032474 -
Ahy19g3494 1005 Pfam Argonaute linker 2 domain 488 534 IPR032472 -
Ahy19g3494 1005 SMART PAZ_2_a_3 352 484 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3494 Ahy-Chr19 157642909 157649954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3494 1 1005 Eukaryotic Initiation Factors Gene Family AT5G43810 80.849 0.0 1659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3494 K11593 - gmx:100816999 1777.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3494 19 157642909 157649954 Ahy19g3494 19 157642909 157649954 ECH
Ahy19g3494 19 157642909 157649954 Ahy9g2141 9 110324064 110331285 hybridization