Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3483 ATGAATAATCCTGATGATCATGGTGTTGGTAGAGTAATGAAGGAGGAGTATCTAGGAGAAGGGTCTTGTTCCTTTTCATATCCAATGGTGGTGGATGTTCCTCCTCCTCCTCCTCCTCCGCCACCGCCGCCGCATCCAATGGAGGGGCTTAATGAGAGTGGTCCTCCGCCGTTCCTGACAAAGACATATGACATCGTTGAAGACCCTTCAACAAATCACATAGTTTCTTGGAGCAAAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTCTCCATTACCCTTCTCCCAAGATTCTTCAAGCACAACAATTTCTCCAGCTTTGTCCGCCAACTCAACACCTATGGTTTTAAAAAGGTAGATCCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTTAGAGGGCAAAGAGTACTTTTGAAGAACATCAAAAGGAGGAAGACAAATCAAACTCATCATCATCATCAGCAAGGTTTAGACCCTTGTGTTGAAGTTGGAAGGTTTGGTGGATTAGATGGAGAACTCAACCGGTTGCGGCGTGACCGGCAGGTACTAATGGCGGAGCTGGTGAAGCTCAGACAACAGCAGCAGGCTACAAAGTCTCAAATTCAAGCCATGGAAGTTAAGCTTCGAAAGACGGAGCAGAAACAGCAGCAGATGATGACCTTCATGGCAAGGGCAATGCAGAATCCAAACTTTGTGCAGCAATTGGTTCAACAAAAGGATTGGAGAAAGGAATTGGAGGAAGCTTTCTCTAATAAGAGGATGAGACCTATTCATCAAGGACCTAGTAACAATCATGATGGATTATTAGGTTATGTTGATGAAGATTGCTCAACTTTTATTAAACTAGAATCACACATTGATGATGATGATGATGATGATAATGATGACAAGTTTGATTTTGAGGTATCAGAGATGGACCTTCTTGGTTTGAATGTTAAGGGACAAAGTAGCAGTGAATATCATCATAATAATAATCATGTTCAAGTTGGAGTAAGTAGAAATAATAATAATAATAATAATAATAATAATAATAATAATATTGATGAAGTGTTTTGGGAAGATTTGTTGAATGAAGGTTTTGAAGATGAAGATGTTCTTGCAGCTGCTGAAGATGTAGATGTCTTGGCTGAACAACTTGGTTATTTAGCTTCTAGTCCTCATAAATAA 1176 0.4031 MNNPDDHGVGRVMKEEYLGEGSCSFSYPMVVDVPPPPPPPPPPPHPMEGLNESGPPPFLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQRVLLKNIKRRKTNQTHHHHQQGLDPCVEVGRFGGLDGELNRLRRDRQVLMAELVKLRQQQQATKSQIQAMEVKLRKTEQKQQQMMTFMARAMQNPNFVQQLVQQKDWRKELEEAFSNKRMRPIHQGPSNNHDGLLGYVDEDCSTFIKLESHIDDDDDDDNDDKFDFEVSEMDLLGLNVKGQSSSEYHHNNNHVQVGVSRNNNNNNNNNNNNNIDEVFWEDLLNEGFEDEDVLAAAEDVDVLAEQLGYLASSPHK* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3483 391 MobiDBLite consensus disorder prediction 29 53 - -
Ahy19g3483 391 Gene3D - 51 149 IPR036388 -
Ahy19g3483 391 SMART hsfneu3 54 147 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy19g3483 391 MobiDBLite consensus disorder prediction 30 51 - -
Ahy19g3483 391 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 43 373 - -
Ahy19g3483 391 Coils Coil 176 217 - -
Ahy19g3483 391 Pfam HSF-type DNA-binding 58 147 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy19g3483 391 SUPERFAMILY "Winged helix" DNA-binding domain 53 147 IPR036390 -
Ahy19g3483 391 PRINTS Heat shock factor (HSF) domain signature 109 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy19g3483 391 PRINTS Heat shock factor (HSF) domain signature 58 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy19g3483 391 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy19g3483 391 ProSitePatterns HSF-type DNA-binding domain signature. 97 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy19g3483 391 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 43 373 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3483 Ahy-Chr19 157562924 157564989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3483 38 390 HSF AT3G22830 55.795 1.65e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ahy19g3483 HSF_DNA-bind 5.20E-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3483 K09419 - gmx:100809515 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3483 19 157562924 157564989 Ahy19g3483 19 157562924 157564989 ECH
Ahy19g3483 19 157562924 157564989 Ahy9g2150 9 110430780 110433007 hybridization