Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3476 ATGGCTGGTAGGCTACCTGGTGTTGGAGTGCCCCCTAGAAAGAGATCTTCTTCTTCATCATCATCTTCTTCTTCTTTGTTAGAGCACAACCACTACAATCTTGCCACCTACCGAAGAGTATCATTAGTGGAGGCAAGTGCCTTGGATGAAACTGCTCTTAAGGCCAGACAAAGGCTTCAGAAGAAGCTTGCACAATTCTTTCCTTCTTCCAGGGAAAATGAGAATCCAATAAGAGAAGGAAAAGTGAAGAAAGAAAAGAGAGATGCAGGAATAATAATAGGAAGGAAGCTATTATCAAATGCATGGTTAATGCGTGCTAAGAAGAAAGAGAGAAAAGTGTGTGCAGTGTGCCTAGAAGATTTCCAGCAAGAGAAGCAGATTATGAACCTTTCTTGCTCTCACAAGTTCCACTCTGCATGCCTTCTCCCATGGCTTCAATCCCATCCTCACTGTCCTTATTGTCGAACCCCAGTTGATGCACACCCACATACTCATTAA 498 0.4317 MAGRLPGVGVPPRKRSSSSSSSSSSLLEHNHYNLATYRRVSLVEASALDETALKARQRLQKKLAQFFPSSRENENPIREGKVKKEKRDAGIIIGRKLLSNAWLMRAKKKERKVCAVCLEDFQQEKQIMNLSCSHKFHSACLLPWLQSHPHCPYCRTPVDAHPHTH* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3476 165 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Ahy19g3476 165 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 17 157 - -
Ahy19g3476 165 MobiDBLite consensus disorder prediction 1 26 - -
Ahy19g3476 165 SMART ring_2 114 154 IPR001841 -
Ahy19g3476 165 Pfam Ring finger domain 113 155 IPR001841 -
Ahy19g3476 165 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 17 157 - -
Ahy19g3476 165 CDD RING-H2_PA-TM-RING 113 155 - -
Ahy19g3476 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 163 IPR013083 -
Ahy19g3476 165 SUPERFAMILY RING/U-box 113 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3476 Ahy-Chr19 157485574 157487689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3476 106 155 C3H Transcription Factor Family AT3G58720 42.000 5.21e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3476 - - lja:Lj1g3v0112670.1 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3476 19 157485574 157487689 Ahy9g2158 9 110508392 110510944 hybridization