Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3464 ATGTTCTCTTCCACATATGATTCAAACCCTTTCCCTAACTTCCCTTCATCTTCTTCTTCTTCATCTTATCCTAATAATAATAATAATAATAATACACTCCCTTTCTACATTGATCCACATAACAACAATGATTTTGCAACCACGCTTCTTCACCATCATGATCCATCATCACTACTTGTTTCTCCCTTTATACCTTCAAGTGAAGTGCCATTCCCGTCATCAGCAGAAGAAGCTGTTGTTGTTGCAGCAATGCTTGATCAAGATGCTGCAGCAAGCTATGGCGGGGGCGGAGGACTAATCTACGGTGGTGGAGGTGTTCCCAATTTGCTGACTCAGAAACCGTTAGGAAGCAGCATAGGTACGAAGAAAGATAGGCACAGCAAGATTCACACATCTCAGGGGTTGAGGGACAGAAGGGTGAGGCTTTCAAGCGAAATAGCGCGCAAGTTCTTTGATCTTCAGGACATGCTGGAGTTCGACAAGCCCAGCAACACGCTCGAATGGCTCTTCACCAAGTCTGAGAATGCAATCAAGGAGCTTGCAAGAAGCAAACATAGCTGCAGCTTCAGCTCCGGCGGCGAGAAATGCTCCTGTTGTGAAGGTAGTGATCAAGCAGCTGGGGTGGTGGTGGTGCACTCAAGCGAGAAATCATCTATGGCGGGAAGCAGTGATTCTTGTTCCAAAGGGAGGAACAAGTTGAAGTGGACACAGAGAGAAGATGTTTGTGTTCAGACAAAGAAGGAGTCAAGGGATAAAGCAAGGGCAAGAGCAAGAGAAAGAACTTGTTACAAAATGAACAACAACAACAACAACAACAACAATGGAAGATTAATGGTGCAAGATTTGGAAGACAGAACCCCTGCACTGCAACAATTTGAGCCTTGTGGAAGATGGTCTAATAACCCTCATCAGATTCTTCAACAACAACCTTACTATAACCCTCTTCGTCATCATCATCATCATCACATACTTGGAGATGCTTTTATTAACAATGTCATTGATGATTCTATCATGATTAAAAGGAACATGAATCGTGACCAAAACCTTATTGCTATCCCTAATAACAACAACAACAACATTATTGTTAATGATGATGACTACCAAAACCACTCGTCACCGTTCCTTTATTCAACTCCAAATTGGGACACCGACGAAACCATAAATGGTTGCTCCAACTTTCGTGCAATGGCAGCCACAATGAATAATCTATCAACATGCTTCACCGACCAGTAA 1233 0.429 MFSSTYDSNPFPNFPSSSSSSSYPNNNNNNNTLPFYIDPHNNNDFATTLLHHHDPSSLLVSPFIPSSEVPFPSSAEEAVVVAAMLDQDAAASYGGGGGLIYGGGGVPNLLTQKPLGSSIGTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHSCSFSSGGEKCSCCEGSDQAAGVVVVHSSEKSSMAGSSDSCSKGRNKLKWTQREDVCVQTKKESRDKARARARERTCYKMNNNNNNNNNGRLMVQDLEDRTPALQQFEPCGRWSNNPHQILQQQPYYNPLRHHHHHHILGDAFINNVIDDSIMIKRNMNRDQNLIAIPNNNNNNIIVNDDDYQNHSSPFLYSTPNWDTDETINGCSNFRAMAATMNNLSTCFTDQ* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3464 410 ProSiteProfiles TCP domain profile. 122 180 IPR017887 -
Ahy19g3464 410 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 36 405 - -
Ahy19g3464 410 Pfam TCP family transcription factor 121 267 IPR017887 -
Ahy19g3464 410 ProSiteProfiles R domain profile. 247 264 IPR017888 -
Ahy19g3464 410 MobiDBLite consensus disorder prediction 1 26 - -
Ahy19g3464 410 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 36 405 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3464 Ahy-Chr19 157353740 157355014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3464 121 184 TCP Transcription Factor Family AT1G67260 70.312 1.46e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy19g3464 TCP 9.60E-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3464 - - adu:110275773 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3464 19 157353740 157355014 Ahy9g2168 9 110621834 110623060 hybridization
Ahy19g3464 19 157353740 157355014 Ahy15g3407 15 156552471 156554850 PCT
Ahy19g3464 19 157353740 157355014 Ahy5g1878 5 86943727 86946284 PCT