LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy19g3397	ATGTCAAACCATTCCATGATGAACAACAATTCCTCAGGTAGTGATTATTTTCTAAGGAAAATTCTAGAGATACAAGATTTTGAGGTTGACACTGACAGCCACACCAACATGCAACAACAACCTCCTCCTGGCTACGGCAGTGATCACCACAAGAAGAAGCGCTACCAGCGCCACACGGCATATCAGATACAAGAGATGGAAACGTTCTTCAAGGCGTGCCCTCACCCAGATGAGCAGCAAAGGATAGAGCTGGGTAATGTTTTGGGATTAGACCATTTGCAAATCAAGTTTTGGTTCCAGAACAAGCGAACCCAACTCAAGAATCAATACGAACGCAACGAGAACTTTGTACTGAAGAATGAGAATGAGGAGCTTCGAGCCGAGAACGAGAACTACAAGGAGATCCTAAATAGTATAAGATGTCATGGCTGCGGAGGCCCACCTCCTCCTCCATTGACCTATGACCAGATGAAGCAGGAGAATAACAAGCTAAGAGAACAGATTGAGTGGATGTCAACCATGATGTCTAACTGTGTTCTACAAGAGCCAGATAATACTTCCAACCCCAACATCACCGTGCCTCAGAATGTGCCTAATATAGAATCATTTCAGCAAAACAACACCAATAACATGATGCCTCGGACTCAGAGTGTGCCTAATCAAGAACTTGGTAACATGGCATCACCACCTCAGAGCAATAACATTGACATGCTGTCTCCAAGTATGTTTAATCAAGGAATTATTGACAGCATGCCATTGACTCAGCAGAACAATGACATTGACATGCCTCGGAATGTGATGAATCAAGGAATTGTCAAAGACATGCCATCATCTCAGGCTCACAACAATGACATTAACGTGACTCCGCCTATGAGTATGTTAAATCAGGGAATTGGTGATAACATTGCCATTATTCCTCCTAATGTGCTTGATCAAGGAAATTGTAGCGTGCCATCATCATCATCTCAACACAACAACGAAATTTACATTAACCTGCCTTTGAGTTCGCTTAATCAAGATGTTGGTAGCTATGGAGCAAAGTCAAAAGACAAAGCAGGGGAAACGAGTAGTGGTAGTGACCCTCTAATTAGGTCACTCCCAGTTTCTAACAAAGCCATGATCGAGGAGCTTGCGGCTGCGTCACTGGAGGAACTCAAAGCCTTGGTTCAAGCAGGGGAGCCCATGTGGGTCAGTGGGGCCCACAACTCTGAAACTATCAACGAACAAGAATACTATAGGACTTTCCCTGGTGGAATTGGTCCAAGACTCTTGGGGTATAAATCTGAATCTTCAAGGGAATCCAGGGTCATCAACATGAATCACGTTAACCTCGTTGAGATCCTTAATGATGTGGATCTATGGTCACGTGTGTTTTGCAGCATTGTTTCAAAAGCAGCAGGATTTCAAGTCCTATCAACTGGACAGGCAGGAAGTTATGATGGAAACTTGCAAGTGGTGTCATCAGAGTTCCAAATGCCAACACCACTTGTTCCTGCTCGCGAGTACTATTTCCTAAGGTACTGCAAGAAGCTCCAAGATGGGAGATGGGTGGTGGTCGATGCTTCCCTGGAAACTTCACAACCAAATGCAACAATCCCTCCGACCCGAAGAAGGCCCTCTGGTTGCCTGATTCAGGCATCTCCAGATGGTTACTCAACAAAGGTTACCTGGGTTGAACATGTAGAAGTGGATGACAGAGCACTAATGGTGAATAGTATGTATAAGCCTCTAGTTGAATCTGGCTTAGCCTTTGGAGCTAGACGCTGGGTCGCACAATTAGATAGAAGATGCGAACGTATTGCAAGTGCAGTACAATCCACCACCATACTGCAACAACAAGAAGACCAACTTAGTGTGACGAGTGTTGAGGGCAAAAAGGGGTTGGTGAAGCTGGCAGAGAGAATGGTTATGGACTTTTTAAGTGGTGTTGGTGCTTCAACAGTAGAAAATTGGGCAATCGTAACTCCATCAACAAATCACAGCAATATAAGAATCATAACCAGAAAGGTTGAGGACGATCCAGGTAGACCTTCCGGTATAGTTATCGGTGCCGCAACTTGTTTCCACCTCGCAGTTCCTCCAAACAGCTTCTTTGATAGGGTTCGAACTGCAAACGCAAGAGCAGAGTGGGATGTTCTCTGTACCGGAGGTGTTGCTGAGGAATTTGCACACATAAAAAATGGTCGCGACCCTGGGAACTGTATCACATTATTCCGTATCAAGAGTTCAGATGCGAAGAACAACGGGATGATAATAGTTCAAGAGAGTAGCAGCGATTCAACAGGGTCATTTGTGATATACGCACCGGTTGATATGAATTCGATCAATGCAGTGATTGGAGGGAGAGATCCCGATGAACTTCCGATTTTGCCCTCGGGAATGGCGATTCTTCCAGATGGAGGTGGAGGTTGTTTGGTGACGTTGGCATTCCAGATATTGATCGAGTCAGATCCAACAAAGAAGATATCGATCTGTTCAGTGAGCACTATTAACCAGTTGGTTAAGGTTACGGTTAACAACATCAAAGCTCTATTCTAA	2538	0.4464	MSNHSMMNNNSSGSDYFLRKILEIQDFEVDTDSHTNMQQQPPPGYGSDHHKKKRYQRHTAYQIQEMETFFKACPHPDEQQRIELGNVLGLDHLQIKFWFQNKRTQLKNQYERNENFVLKNENEELRAENENYKEILNSIRCHGCGGPPPPPLTYDQMKQENNKLREQIEWMSTMMSNCVLQEPDNTSNPNITVPQNVPNIESFQQNNTNNMMPRTQSVPNQELGNMASPPQSNNIDMLSPSMFNQGIIDSMPLTQQNNDIDMPRNVMNQGIVKDMPSSQAHNNDINVTPPMSMLNQGIGDNIAIIPPNVLDQGNCSVPSSSSQHNNEIYINLPLSSLNQDVGSYGAKSKDKAGETSSGSDPLIRSLPVSNKAMIEELAAASLEELKALVQAGEPMWVSGAHNSETINEQEYYRTFPGGIGPRLLGYKSESSRESRVINMNHVNLVEILNDVDLWSRVFCSIVSKAAGFQVLSTGQAGSYDGNLQVVSSEFQMPTPLVPAREYYFLRYCKKLQDGRWVVVDASLETSQPNATIPPTRRRPSGCLIQASPDGYSTKVTWVEHVEVDDRALMVNSMYKPLVESGLAFGARRWVAQLDRRCERIASAVQSTTILQQQEDQLSVTSVEGKKGLVKLAERMVMDFLSGVGASTVENWAIVTPSTNHSNIRIITRKVEDDPGRPSGIVIGAATCFHLAVPPNSFFDRVRTANARAEWDVLCTGGVAEEFAHIKNGRDPGNCITLFRIKSSDAKNNGMIIVQESSSDSTGSFVIYAPVDMNSINAVIGGRDPDELPILPSGMAILPDGGGGCLVTLAFQILIESDPTKKISICSVSTINQLVKVTVNNIKALF*	846

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy19g3397	845	SMART	START_1	376	599	IPR002913	GO:0008289
	Ahy19g3397	845	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1	348	843	-	-
	Ahy19g3397	845	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1	24	183	-	-
	Ahy19g3397	845	Coils	Coil	154	174	-	-
	Ahy19g3397	845	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1	348	843	IPR042160	-
	Ahy19g3397	845	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1	24	183	IPR042160	-
	Ahy19g3397	845	MobiDBLite	consensus disorder prediction	33	55	-	-
	Ahy19g3397	845	Pfam	Homeodomain	52	107	IPR001356	GO:0003677
	Ahy19g3397	845	MobiDBLite	consensus disorder prediction	341	364	-	-
	Ahy19g3397	845	Pfam	START domain	377	599	IPR002913	GO:0008289

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy19g3397	Ahy-Chr19	156780690	156784399	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy19g3397	328	843	Homeobox Transcription Factor Family	AT4G04890	51.667	0.0	558

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Ahy19g3397		START	5.30E-42	CL0209

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy19g3397	K09338		-	gmx:100782240	560.836

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