Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3360 ATGTCGAGTTCAAGAAGCGGTGCAAGGAAAAGCAGGGGTCGCCAAAGAATTGAGATGAAGAAGATGAGCAATGAAAGCAACCTCCAAGTCACGTTCTCTAAGCGTCGCAGCGGCTTGTTCAAGAAAGCAAGTGAGCTTTGCACCCTCTGCGGTGCTGACGTGGCACTCGTCGTGTTTTCTCCTGGCCAGAAAGTCTTTTCCTTCGGCCACCCAAACGTGGAAACCGTTATGGATCGTTACCTGTCACGTGCATCTACCCTCCCAAACTTATCCGGCACTTTGCAATTCATTGAGGCCCACCGCAACGCCAATGTGCGTGACTTCAACTCTCGACTCATGCAGGTGAATAACCAACTTGAAACTGAGAAGCAGCGTAGTGATCACTTGAATCATTTTCATAAGGTTGCCATGAATCAGTTCTGGTGGGCCTTGCCCATTGAAAATATGAGCAAGACCCAACTAAACCAGTTCAGGGCGGCACTTGAGAACCTTAAAAAGAGTGTCGCCCAACATGTCAATAGCCTCTTCGTTCACGAAAGTATTAACAACCCAAATCAATTCTTTGGTCAGTCATCTTCAAATGCTCTAGTGCCACATCAGCCTTCTCCTCCTCCTCTTCTTCCACCACCACCACCTTCCGCTCAACTAGTTCCTCAGTTGTTTGGTAATGGTCCACACTTTCTACAGCATCAGAGCCCTATGATGCTTCATGAGAGCCCTATGATGCAAAATCATATGTTTAACATGAACAACATTGGACAATTTGGGTCTTCTGCTGCTGGATTCCTTTGA 792 0.471 MSSSRSGARKSRGRQRIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGQKVFSFGHPNVETVMDRYLSRASTLPNLSGTLQFIEAHRNANVRDFNSRLMQVNNQLETEKQRSDHLNHFHKVAMNQFWWALPIENMSKTQLNQFRAALENLKKSVAQHVNSLFVHESINNPNQFFGQSSSNALVPHQPSPPPLLPPPPPSAQLVPQLFGNGPHFLQHQSPMMLHESPMMQNHMFNMNNIGQFGSSAAGFL* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3360 263 PANTHER MADS BOX PROTEIN 11 196 - -
Ahy19g3360 263 MobiDBLite consensus disorder prediction 1 25 - -
Ahy19g3360 263 Coils Coil 154 174 - -
Ahy19g3360 263 MobiDBLite consensus disorder prediction 188 213 - -
Ahy19g3360 263 CDD MADS_MEF2_like 13 81 IPR033896 GO:0000977|GO:0045944
Ahy19g3360 263 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Ahy19g3360 263 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Ahy19g3360 263 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Ahy19g3360 263 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Ahy19g3360 263 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Ahy19g3360 263 Gene3D - 92 189 - -
Ahy19g3360 263 Gene3D - 24 90 IPR036879 GO:0003677|GO:0046983
Ahy19g3360 263 MobiDBLite consensus disorder prediction 198 213 - -
Ahy19g3360 263 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 11 196 - -
Ahy19g3360 263 Coils Coil 105 125 - -
Ahy19g3360 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Ahy19g3360 263 SUPERFAMILY SRF-like 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3360 Ahy-Chr19 156506151 156506942 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3360 8 195 Type I MADS-box Gene Family AT5G60440 54.497 4.90e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy19g3360 SRF-TF 8.50E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3360 - - aip:107616132 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3360 19 156506151 156506942 Ahy19g3360 19 156506151 156506942 ECH
Ahy19g3360 19 156506151 156506942 Ahy9g2272 9 111686020 111686594 hybridization
Ahy5g1321 5 35857849 35858849 Ahy19g3360 19 156506151 156506942 PCT
Ahy19g3360 19 156506151 156506942 Ahy5g1321 5 35857849 35858849 PCT