Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3357 ATGTCTACTGCTAGGAAAAGCCGTGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAATGAGAGCAACCTCCAAGTCACATTTTCCAAGCGCCGTGGTGGATTGTTTAACAAAGCTAGTGAACTTTGCACTCTCTGTGGTGCTGAAGTGGCAATCATCGTGTTTTCCCCAGGACAGAAGGTCTTCTCCTTTGGCCACCCAAGCGTTCAAACAATCATAGATCGTTACCTCATGCATGCGTCGATGCATAACTCATCAGGCACCATGCAGTTCATCGAGGCCCAGCGAAGTGCTAGTGTGTGTGAGCTGAACGAGCAGCTCACACGAATTAGCAACCAGCTGGACGTCGAAAAAAAACGTAGCAACGAACTGAGCCGCCTTCAAAAAACTGTCATGACACAGTTTTGGTGGGCTTTGTCCATTGAAAATATGGACAAGACCCAACTTAACCAACTGAAGGCGGCTTTAGAAAAACTCAAGAAGAGTGTTATGTACTATGCTGAAAAGCTCCATATTCAAGGCATTGTTGCTAACCCTCCTCAGCCACTCCTTGGTTTGCCATCTTCAAGTGATGTGGTGCATCATCACCAACCTCCTTTCCCACCACCAACAACTCATCATGTGCCTCAACTTTTCGCTTCCCATATTCGTCAACCTCTGATGCTTAACGGCGAGAACCGTTTGATGCATAATCCCATGTTTGCTGATTGGAGCATGTTGCACCAACATGGTTTTAACATCAACACTGGTATGGGAGGGTTTGGAAATATGGGTGGATTGTTTTGA 786 0.4606 MSTARKSRGRQKIEMKKMSNESNLQVTFSKRRGGLFNKASELCTLCGAEVAIIVFSPGQKVFSFGHPSVQTIIDRYLMHASMHNSSGTMQFIEAQRSASVCELNEQLTRISNQLDVEKKRSNELSRLQKTVMTQFWWALSIENMDKTQLNQLKAALEKLKKSVMYYAEKLHIQGIVANPPQPLLGLPSSSDVVHHHQPPFPPPTTHHVPQLFASHIRQPLMLNGENRLMHNPMFADWSMLHQHGFNINTGMGGFGNMGGLF* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3357 261 PANTHER MADS BOX PROTEIN 7 179 - -
Ahy19g3357 261 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Ahy19g3357 261 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 179 - -
Ahy19g3357 261 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Ahy19g3357 261 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Ahy19g3357 261 SUPERFAMILY SRF-like 9 90 IPR036879 GO:0003677|GO:0046983
Ahy19g3357 261 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Ahy19g3357 261 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Ahy19g3357 261 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Ahy19g3357 261 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Ahy19g3357 261 Gene3D - 88 173 - -
Ahy19g3357 261 Coils Coil 149 169 - -
Ahy19g3357 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3357 Ahy-Chr19 156485320 156486204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3357 4 190 Type I MADS-box Gene Family AT5G60440 50.521 2.59e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy19g3357 SRF-TF 1.10E-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3357 - - aip:107616132 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3357 19 156485320 156486204 Ahy19g3357 19 156485320 156486204 ECH
Ahy19g3357 19 156485320 156486204 Ahy9g2275 9 111709095 111710101 hybridization