Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g3356 ATGTCTAAGAAAAAATCCAGCTTAGGTCGCCAAAAGATACCTATTGAGAAAATTCCAAAAAAGAGTCACTTACAAGTTACATTCTCTAAGAGGCGGTCAGGGCTATTCAAGAAAGCAAGTGAACTTTGCACACTTTGTGGGGTCGAGATAACGATCGTGGTTTTCTCTCCGGCCGATAAGGCCTTCTCCTTTGGCCATCCGGAGGTAGAGTCTATCATCGATCGTTATCTCGTCCTGAACCCGCCTCACGAGTCTATATCGAGTACTCAACAACTGGTTGAGGCGCATAGAAACGCTAATGTCCGTGATCTCAATATGCAACTTACACAACTGCTTAACCATTTGGAGATGGAGAAGAAGCGTGGGGAGGAGCTTGATCATGTGAGGAAAGCGAGGCAGAGGCAGTTTTGGTGGGAAAGCTCTACTGATGATCTTGGTTTTCATGAATTGATCCAACTAAAGGCATCAATTGAGGAGCTCAAGAAGAACTTGGCAAAACATGTTAGCAAAATCATCATGATGGACCAAACCAACATGGATTCACGAATTATTGGGGTTAATAGTAATAATGGATTACTTAATCGTTATGATCATGCATTTGATAGCAACAAATCTGATGCTGCTGCCTTCAATGTTGCTCCTACACTGCCTCCTCCTAATAACAATGCCTATTACATGGGTTTTCGTCATGGTTATCTTTGA 702 0.4259 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEITIVVFSPADKAFSFGHPEVESIIDRYLVLNPPHESISSTQQLVEAHRNANVRDLNMQLTQLLNHLEMEKKRGEELDHVRKARQRQFWWESSTDDLGFHELIQLKASIEELKKNLAKHVSKIIMMDQTNMDSRIIGVNSNNGLLNRYDHAFDSNKSDAAAFNVAPTLPPPNNNAYYMGFRHGYL* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g3356 233 Gene3D - 21 85 IPR036879 GO:0003677|GO:0046983
Ahy19g3356 233 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Ahy19g3356 233 PANTHER MADS BOX PROTEIN 7 182 - -
Ahy19g3356 233 Coils Coil 150 170 - -
Ahy19g3356 233 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Ahy19g3356 233 Gene3D - 87 187 - -
Ahy19g3356 233 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Ahy19g3356 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Ahy19g3356 233 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Ahy19g3356 233 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Ahy19g3356 233 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Ahy19g3356 233 Coils Coil 98 125 - -
Ahy19g3356 233 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 182 - -
Ahy19g3356 233 SUPERFAMILY SRF-like 9 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g3356 Ahy-Chr19 156475688 156476761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g3356 5 233 Type I MADS-box Gene Family AT5G60440 44.758 9.61e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy19g3356 SRF-TF 2.10E-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g3356 - - gmx:100793705 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3356 19 156475688 156476761 Ahy19g3356 19 156475688 156476761 ECH
Ahy19g3356 19 156475688 156476761 Ahy9g2276 9 111758516 111759356 hybridization